Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26656 | 3' | -60.7 | NC_005808.1 | + | 16217 | 0.68 | 0.266945 |
Target: 5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3' miRNA: 3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 14496 | 0.68 | 0.287542 |
Target: 5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3' miRNA: 3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25826 | 0.67 | 0.31692 |
Target: 5'- uCGUugCCGCCGCccAGCAGcgCGCCCaGCGu -3' miRNA: 3'- -GCG--GGUGGUGc-UCGUCaaGCGGG-CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 42499 | 0.67 | 0.31692 |
Target: 5'- uGCCCaagcuGCCGCGcGCAGaaUGCCgGCGu -3' miRNA: 3'- gCGGG-----UGGUGCuCGUCaaGCGGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 3795 | 0.67 | 0.332436 |
Target: 5'- uGCCCACCACcGGCGugaacggcacGggCGCCacgaGCGc -3' miRNA: 3'- gCGGGUGGUGcUCGU----------CaaGCGGg---CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 35673 | 0.67 | 0.340401 |
Target: 5'- gGCUuucaCACgCGCGAGCGGgUCGgCUCGCGu -3' miRNA: 3'- gCGG----GUG-GUGCUCGUCaAGC-GGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 9265 | 0.67 | 0.340401 |
Target: 5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3' miRNA: 3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 24729 | 0.67 | 0.346058 |
Target: 5'- gGCCCGCgGCGGGCGcgacaacaccauccUGCCCGCc -3' miRNA: 3'- gCGGGUGgUGCUCGUcaa-----------GCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 3558 | 0.67 | 0.348503 |
Target: 5'- uGCgUACUgguacaGCGGGCcGUcgaacUCGCCCGCGa -3' miRNA: 3'- gCGgGUGG------UGCUCGuCA-----AGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 9623 | 0.69 | 0.243823 |
Target: 5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3' miRNA: 3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 14972 | 0.7 | 0.212287 |
Target: 5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3' miRNA: 3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 2063 | 0.7 | 0.210642 |
Target: 5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3' miRNA: 3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 34264 | 0.77 | 0.069153 |
Target: 5'- cCGCCCACgugucgggcaGCGAGCAGUUCGCgggggcgUCGCGg -3' miRNA: 3'- -GCGGGUGg---------UGCUCGUCAAGCG-------GGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 27889 | 0.76 | 0.071333 |
Target: 5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3' miRNA: 3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26137 | 0.73 | 0.125806 |
Target: 5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3' miRNA: 3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25229 | 0.71 | 0.173432 |
Target: 5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3' miRNA: 3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 28126 | 0.71 | 0.186278 |
Target: 5'- uGCCCGCUguuCGAGCAGaccgUCGCCgaCGUGu -3' miRNA: 3'- gCGGGUGGu--GCUCGUCa---AGCGG--GCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 4587 | 0.71 | 0.186278 |
Target: 5'- cCGCCCAgcacgccacguUCACGGGCGc--CGCCCGUGa -3' miRNA: 3'- -GCGGGU-----------GGUGCUCGUcaaGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 8599 | 0.7 | 0.201527 |
Target: 5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3' miRNA: 3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 37061 | 0.7 | 0.206847 |
Target: 5'- gGCCCACUcgGCGGGguGcguUUCGCgCGUGg -3' miRNA: 3'- gCGGGUGG--UGCUCguC---AAGCGgGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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