Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26656 | 3' | -60.7 | NC_005808.1 | + | 25229 | 0.71 | 0.173432 |
Target: 5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3' miRNA: 3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 15110 | 0.66 | 0.365116 |
Target: 5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3' miRNA: 3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 9265 | 0.67 | 0.340401 |
Target: 5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3' miRNA: 3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26137 | 0.73 | 0.125806 |
Target: 5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3' miRNA: 3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 27889 | 0.76 | 0.071333 |
Target: 5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3' miRNA: 3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 34264 | 0.77 | 0.069153 |
Target: 5'- cCGCCCACgugucgggcaGCGAGCAGUUCGCgggggcgUCGCGg -3' miRNA: 3'- -GCGGGUGg---------UGCUCGUCAAGCG-------GGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 13495 | 0.71 | 0.193264 |
Target: 5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3' miRNA: 3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 24673 | 0.73 | 0.131423 |
Target: 5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3' miRNA: 3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26737 | 0.67 | 0.348503 |
Target: 5'- gGgCCACCGCcAGCg---CGCCCGCu -3' miRNA: 3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 11491 | 0.67 | 0.348503 |
Target: 5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3' miRNA: 3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 11241 | 0.68 | 0.301956 |
Target: 5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3' miRNA: 3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 26430 | 0.68 | 0.301956 |
Target: 5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3' miRNA: 3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 24774 | 0.68 | 0.301956 |
Target: 5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3' miRNA: 3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 27252 | 0.68 | 0.29468 |
Target: 5'- gCGCCCcaggcucuugGCCgaggcaAUGAaccGCAGUUCGCCgCGCGc -3' miRNA: 3'- -GCGGG----------UGG------UGCU---CGUCAAGCGG-GCGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 12667 | 0.71 | 0.191244 |
Target: 5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3' miRNA: 3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25366 | 0.67 | 0.332436 |
Target: 5'- aGCCgGCCAcCGGGCAGg-CGCCagaaGCc -3' miRNA: 3'- gCGGgUGGU-GCUCGUCaaGCGGg---CGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 5535 | 0.67 | 0.332436 |
Target: 5'- cCGCCCAgguuCCGCc--CAGgUCGCCCGCc -3' miRNA: 3'- -GCGGGU----GGUGcucGUCaAGCGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 25057 | 0.67 | 0.332436 |
Target: 5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3' miRNA: 3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 17420 | 0.67 | 0.340401 |
Target: 5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3' miRNA: 3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5' |
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26656 | 3' | -60.7 | NC_005808.1 | + | 39777 | 0.67 | 0.340401 |
Target: 5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3' miRNA: 3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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