miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26656 5' -57.6 NC_005808.1 + 9759 1.06 0.000489
Target:  5'- cUUCGAGGGCAAGGCGCCCAGCAUUGAa -3'
miRNA:   3'- -AAGCUCCCGUUCCGCGGGUCGUAACU- -5'
26656 5' -57.6 NC_005808.1 + 10072 0.72 0.176204
Target:  5'- -gCGGGGGCcGGGCGCgCGGCAc--- -3'
miRNA:   3'- aaGCUCCCGuUCCGCGgGUCGUaacu -5'
26656 5' -57.6 NC_005808.1 + 14933 0.72 0.186245
Target:  5'- ----cGGGCAacuuaaAGGCGCCCAGCGUg-- -3'
miRNA:   3'- aagcuCCCGU------UCCGCGGGUCGUAacu -5'
26656 5' -57.6 NC_005808.1 + 16931 0.71 0.231577
Target:  5'- uUUCGuAGGGCAcGGCGCcguCCAGCAg--- -3'
miRNA:   3'- -AAGC-UCCCGUuCCGCG---GGUCGUaacu -5'
26656 5' -57.6 NC_005808.1 + 32191 0.7 0.25755
Target:  5'- aUUCGGGGGCGucgAGGUcggcagcgGCCagGGCGUUGAg -3'
miRNA:   3'- -AAGCUCCCGU---UCCG--------CGGg-UCGUAACU- -5'
26656 5' -57.6 NC_005808.1 + 13248 0.68 0.341183
Target:  5'- -aCGccGGCcaAGGGCGCCCAGCGc--- -3'
miRNA:   3'- aaGCucCCG--UUCCGCGGGUCGUaacu -5'
26656 5' -57.6 NC_005808.1 + 18922 0.67 0.413375
Target:  5'- -aCGuGGGCAuGGGcCGCCCGGCc---- -3'
miRNA:   3'- aaGCuCCCGU-UCC-GCGGGUCGuaacu -5'
26656 5' -57.6 NC_005808.1 + 16468 0.66 0.438783
Target:  5'- aUCGGGGGCGugacggacaggucGGGCGCgauauugucguccaCCAGCGa--- -3'
miRNA:   3'- aAGCUCCCGU-------------UCCGCG--------------GGUCGUaacu -5'
26656 5' -57.6 NC_005808.1 + 34989 0.66 0.442771
Target:  5'- -cCGGGGGCcAGGuCGUCgGGC-UUGAc -3'
miRNA:   3'- aaGCUCCCGuUCC-GCGGgUCGuAACU- -5'
26656 5' -57.6 NC_005808.1 + 6351 0.66 0.451818
Target:  5'- gUCGuGGGCGAccuguucGGCcuGCCCAGCGc--- -3'
miRNA:   3'- aAGCuCCCGUU-------CCG--CGGGUCGUaacu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.