Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26657 | 5' | -64.6 | NC_005808.1 | + | 13812 | 0.66 | 0.20702 |
Target: 5'- gAUCGGCaaccagggcaagcgCGAcGCCGUGCGCGCcgagaagcGCaCCg -3' miRNA: 3'- -UAGCCG--------------GCUcCGGCACGCGCGa-------CG-GG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 15166 | 0.67 | 0.203334 |
Target: 5'- --gGGCCuGcGGCCGccggGCGCGgUGCgCCa -3' miRNA: 3'- uagCCGG-CuCCGGCa---CGCGCgACG-GG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 8573 | 0.67 | 0.198166 |
Target: 5'- cUgGGCguCGuAGGCCGcGCGUGCgGCCUg -3' miRNA: 3'- uAgCCG--GC-UCCGGCaCGCGCGaCGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 41788 | 0.67 | 0.198166 |
Target: 5'- uUCGGCaaGGGCUGggcgcgGCGCGUcGCCg -3' miRNA: 3'- uAGCCGgcUCCGGCa-----CGCGCGaCGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 16334 | 0.67 | 0.193113 |
Target: 5'- -gCGaGCCGAccaGGCCG-GCG-GgUGCCCg -3' miRNA: 3'- uaGC-CGGCU---CCGGCaCGCgCgACGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 23590 | 0.67 | 0.188174 |
Target: 5'- --gGGCgaCGAuGGCCGUcauGCGUGCaGCCCc -3' miRNA: 3'- uagCCG--GCU-CCGGCA---CGCGCGaCGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 34971 | 0.67 | 0.188174 |
Target: 5'- --aGGCCaAGGCCacGUGUccgGCGCUGCgCg -3' miRNA: 3'- uagCCGGcUCCGG--CACG---CGCGACGgG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 25776 | 0.67 | 0.188174 |
Target: 5'- -gCGGCaaCGAuGGCCGcgaUGCGCGCggcgcGCUCg -3' miRNA: 3'- uaGCCG--GCU-CCGGC---ACGCGCGa----CGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 28628 | 0.67 | 0.183346 |
Target: 5'- -gCGGauGAGGCCGgccaguuccGCGCGCagUGCCa -3' miRNA: 3'- uaGCCggCUCCGGCa--------CGCGCG--ACGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 36026 | 0.67 | 0.180502 |
Target: 5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3' miRNA: 3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 27797 | 0.67 | 0.180502 |
Target: 5'- -gCGcGCCGcgcaGCCGcagcacguccucgcGCGCGCUGCCCg -3' miRNA: 3'- uaGC-CGGCuc--CGGCa-------------CGCGCGACGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 4552 | 0.67 | 0.178628 |
Target: 5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3' miRNA: 3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 428 | 0.67 | 0.178628 |
Target: 5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3' miRNA: 3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 17513 | 0.67 | 0.178628 |
Target: 5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3' miRNA: 3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 22381 | 0.67 | 0.174018 |
Target: 5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3' miRNA: 3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 18727 | 0.68 | 0.169515 |
Target: 5'- --aGGCCGGGGgCG-G-GCGCcGCCCc -3' miRNA: 3'- uagCCGGCUCCgGCaCgCGCGaCGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 22068 | 0.68 | 0.169515 |
Target: 5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3' miRNA: 3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 29086 | 0.68 | 0.169515 |
Target: 5'- cUCGggcGCCGAGGucaggcCCGUGCGggacuUGCUGCCg -3' miRNA: 3'- uAGC---CGGCUCC------GGCACGC-----GCGACGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 35551 | 0.68 | 0.169515 |
Target: 5'- -cCGcCCGAGGCCaUGCGC-CUGCUg -3' miRNA: 3'- uaGCcGGCUCCGGcACGCGcGACGGg -5' |
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26657 | 5' | -64.6 | NC_005808.1 | + | 24584 | 0.68 | 0.165116 |
Target: 5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3' miRNA: 3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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