miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 27435 0.66 0.330655
Target:  5'- cGCGCCcggcGGCCGcAGGCCcugGCGCuGGuauGCCa -3'
miRNA:   3'- -CGCGG----CUGGC-UUCGG---UGCGuCC---CGGa -5'
26658 3' -61.9 NC_005808.1 + 16650 0.66 0.318281
Target:  5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 37989 0.66 0.315242
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26658 3' -61.9 NC_005808.1 + 27828 0.66 0.338567
Target:  5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3'
miRNA:   3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24562 0.66 0.330655
Target:  5'- cGCGgCGAUggCGAggccGGCCACGgucGGGCCg -3'
miRNA:   3'- -CGCgGCUG--GCU----UCGGUGCgu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 13524 0.67 0.259054
Target:  5'- uGC-CCGAcaccgcgcCCGAGGCCGCcaaGCuggcGGGCCUg -3'
miRNA:   3'- -CGcGGCU--------GGCUUCGGUG---CGu---CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 42262 0.67 0.259054
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 37491 0.67 0.293152
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 6642 0.67 0.27229
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 28109 0.67 0.259054
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 6451 0.67 0.276365
Target:  5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3'
miRNA:   3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24813 0.67 0.259054
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26658 3' -61.9 NC_005808.1 + 27769 0.67 0.27229
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 14283 0.67 0.27229
Target:  5'- cGCGCC-AagGAAGCCGCGCuGcGCCUg -3'
miRNA:   3'- -CGCGGcUggCUUCGGUGCGuCcCGGA- -5'
26658 3' -61.9 NC_005808.1 + 29442 0.67 0.27229
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 41814 0.67 0.27842
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 33721 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33608 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 25149 0.67 0.286062
Target:  5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3'
miRNA:   3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 18082 0.67 0.259054
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.