miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 33560 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33272 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 27769 0.67 0.27229
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 36313 0.67 0.293153
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24813 0.67 0.259054
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26658 3' -61.9 NC_005808.1 + 42262 0.67 0.259054
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 29442 0.67 0.27229
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 33512 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 21937 0.67 0.286062
Target:  5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3'
miRNA:   3'- cGCGGCUGGcUUCGGugcGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 811 0.67 0.279108
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26658 3' -61.9 NC_005808.1 + 34369 0.67 0.27229
Target:  5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3'
miRNA:   3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5'
26658 3' -61.9 NC_005808.1 + 11520 0.67 0.27229
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26658 3' -61.9 NC_005808.1 + 6642 0.67 0.27229
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 28109 0.67 0.259054
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 18082 0.67 0.259054
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 33320 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33416 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33464 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33608 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 42167 0.68 0.246349
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.