miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 18757 0.72 0.113929
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 20125 0.72 0.12745
Target:  5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3'
miRNA:   3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 17448 0.72 0.124021
Target:  5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3'
miRNA:   3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 17074 0.71 0.142058
Target:  5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3'
miRNA:   3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 22852 0.71 0.134572
Target:  5'- aUGCUGACCG--GCC-CGCAGGGCg- -3'
miRNA:   3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 24419 0.71 0.138268
Target:  5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3'
miRNA:   3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 9943 0.71 0.154004
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 19115 0.71 0.145943
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 16355 0.71 0.14872
Target:  5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3'
miRNA:   3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 35520 0.71 0.142058
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 35546 0.7 0.175946
Target:  5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3'
miRNA:   3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5'
26658 3' -61.9 NC_005808.1 + 26327 0.7 0.166854
Target:  5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3'
miRNA:   3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 40901 0.7 0.171346
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8465 0.7 0.166854
Target:  5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3'
miRNA:   3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 37538 0.7 0.158184
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 10464 0.7 0.161171
Target:  5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3'
miRNA:   3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8557 0.7 0.165526
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8806 0.7 0.171346
Target:  5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3'
miRNA:   3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8718 0.7 0.157762
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 23753 0.7 0.180656
Target:  5'- aGCGCCauGCCGgcGCCAC-C-GGGCCg -3'
miRNA:   3'- -CGCGGc-UGGCuuCGGUGcGuCCCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.