miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 10521 0.67 0.293152
Target:  5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3'
miRNA:   3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5'
26658 3' -61.9 NC_005808.1 + 21937 0.67 0.286062
Target:  5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3'
miRNA:   3'- cGCGGCUGGcUUCGGugcGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 811 0.67 0.279108
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26658 3' -61.9 NC_005808.1 + 34369 0.67 0.27229
Target:  5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3'
miRNA:   3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5'
26658 3' -61.9 NC_005808.1 + 11520 0.67 0.27229
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26658 3' -61.9 NC_005808.1 + 6642 0.67 0.27229
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 28109 0.67 0.259054
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 33560 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33512 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33464 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33416 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33368 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33320 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33272 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 28672 0.67 0.291011
Target:  5'- cGCGCCcgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3'
miRNA:   3'- -CGCGG--------------CUGGCUucGGUGCG----UC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 27828 0.66 0.338567
Target:  5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3'
miRNA:   3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 29016 0.66 0.338567
Target:  5'- -aGgCGACCaGgcGCCGCGCuucGGCCa -3'
miRNA:   3'- cgCgGCUGG-CuuCGGUGCGuc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 25349 0.66 0.338567
Target:  5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3'
miRNA:   3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 7557 0.66 0.330655
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 1177 0.66 0.338567
Target:  5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3'
miRNA:   3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.