Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26658 | 3' | -61.9 | NC_005808.1 | + | 14283 | 0.67 | 0.27229 |
Target: 5'- cGCGCC-AagGAAGCCGCGCuGcGCCUg -3' miRNA: 3'- -CGCGGcUggCUUCGGUGCGuCcCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 14809 | 0.66 | 0.318281 |
Target: 5'- cGCGCCaaugcugcgcguacuGcCUGggGCUaccggGCGCAGGGCa- -3' miRNA: 3'- -CGCGG---------------CuGGCuuCGG-----UGCGUCCCGga -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 15459 | 0.66 | 0.307742 |
Target: 5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3' miRNA: 3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 16202 | 0.7 | 0.180656 |
Target: 5'- aGCGUgCGGCCGcAGuCCuACGuCGGGGCCa -3' miRNA: 3'- -CGCG-GCUGGCuUC-GG-UGC-GUCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 16355 | 0.71 | 0.14872 |
Target: 5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3' miRNA: 3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 16584 | 0.68 | 0.240192 |
Target: 5'- cGCGCCGGaCGAGGCCgaccACGCGaugguguuGGcGCCg -3' miRNA: 3'- -CGCGGCUgGCUUCGG----UGCGU--------CC-CGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 16650 | 0.66 | 0.318281 |
Target: 5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3' miRNA: 3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 17074 | 0.71 | 0.142058 |
Target: 5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3' miRNA: 3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 17448 | 0.72 | 0.124021 |
Target: 5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3' miRNA: 3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 18082 | 0.67 | 0.259054 |
Target: 5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3' miRNA: 3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 18451 | 0.66 | 0.315242 |
Target: 5'- cCGCC-ACCGgcGCCAUcgGCAaGGCCa -3' miRNA: 3'- cGCGGcUGGCuuCGGUG--CGUcCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 18757 | 0.72 | 0.113929 |
Target: 5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3' miRNA: 3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 19059 | 0.69 | 0.188919 |
Target: 5'- gGCGUCGaucagcguguccucGCCGAGGUCACGCGauugcaGGCCg -3' miRNA: 3'- -CGCGGC--------------UGGCUUCGGUGCGUc-----CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 19115 | 0.71 | 0.145943 |
Target: 5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3' miRNA: 3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 19615 | 0.77 | 0.053668 |
Target: 5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3' miRNA: 3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 20125 | 0.72 | 0.12745 |
Target: 5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3' miRNA: 3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 21254 | 0.72 | 0.117419 |
Target: 5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3' miRNA: 3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 21349 | 0.68 | 0.255188 |
Target: 5'- aCGCCGACCGcuGGGCCGacacuuacgccgacaUGCuGGGCa- -3' miRNA: 3'- cGCGGCUGGC--UUCGGU---------------GCGuCCCGga -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 21937 | 0.67 | 0.286062 |
Target: 5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3' miRNA: 3'- cGCGGCUGGcUUCGGugcGUCCCGga -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 22836 | 0.66 | 0.330655 |
Target: 5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3' miRNA: 3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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