Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26658 | 3' | -61.9 | NC_005808.1 | + | 33721 | 0.67 | 0.279109 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 34369 | 0.67 | 0.27229 |
Target: 5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3' miRNA: 3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35156 | 0.69 | 0.185477 |
Target: 5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3' miRNA: 3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35250 | 0.76 | 0.06011 |
Target: 5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3' miRNA: 3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35367 | 0.74 | 0.084235 |
Target: 5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3' miRNA: 3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35520 | 0.71 | 0.142058 |
Target: 5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3' miRNA: 3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35546 | 0.7 | 0.175946 |
Target: 5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3' miRNA: 3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 35822 | 0.67 | 0.293152 |
Target: 5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3' miRNA: 3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 36115 | 0.69 | 0.205911 |
Target: 5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3' miRNA: 3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 36313 | 0.67 | 0.293153 |
Target: 5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3' miRNA: 3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 36911 | 0.66 | 0.300379 |
Target: 5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3' miRNA: 3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 37491 | 0.67 | 0.293152 |
Target: 5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3' miRNA: 3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 37538 | 0.7 | 0.158184 |
Target: 5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3' miRNA: 3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 37989 | 0.66 | 0.315242 |
Target: 5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3' miRNA: 3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 39902 | 0.67 | 0.277049 |
Target: 5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3' miRNA: 3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 40701 | 0.66 | 0.300379 |
Target: 5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3' miRNA: 3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 40901 | 0.7 | 0.171346 |
Target: 5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3' miRNA: 3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 41814 | 0.67 | 0.27842 |
Target: 5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3' miRNA: 3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 42167 | 0.68 | 0.246349 |
Target: 5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3' miRNA: 3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5' |
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26658 | 3' | -61.9 | NC_005808.1 | + | 42262 | 0.67 | 0.259054 |
Target: 5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3' miRNA: 3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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