miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 33680 0.69 0.200627
Target:  5'- aGCGgUGGCCGu-GCCGCcaGCGGuGGCCg -3'
miRNA:   3'- -CGCgGCUGGCuuCGGUG--CGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33608 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33560 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33512 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33464 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33416 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33368 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33320 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33272 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 32918 0.73 0.09953
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5'
26658 3' -61.9 NC_005808.1 + 32368 0.67 0.293152
Target:  5'- uCGCCG-CCGAggccccGGCCGCccaGCAGGaaGCCa -3'
miRNA:   3'- cGCGGCuGGCU------UCGGUG---CGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 31709 0.68 0.240192
Target:  5'- cCGCCuGACCagcccGCCGCGCGcGGGCUUu -3'
miRNA:   3'- cGCGG-CUGGcuu--CGGUGCGU-CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 31027 0.8 0.0303
Target:  5'- uUGCCGGCCGAGGCaauCGCGcGGGCCa -3'
miRNA:   3'- cGCGGCUGGCUUCGgu-GCGU-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 30418 0.66 0.32288
Target:  5'- uCGCuCGGCauggCGAugAGCgCGgGCAGGGCCUc -3'
miRNA:   3'- cGCG-GCUG----GCU--UCG-GUgCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 30096 0.66 0.303308
Target:  5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3'
miRNA:   3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 29442 0.67 0.27229
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 29177 0.72 0.117419
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 29016 0.66 0.338567
Target:  5'- -aGgCGACCaGgcGCCGCGCuucGGCCa -3'
miRNA:   3'- cgCgGCUGG-CuuCGGUGCGuc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 28672 0.67 0.291011
Target:  5'- cGCGCCcgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3'
miRNA:   3'- -CGCGG--------------CUGGCUucGGUGCG----UC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 28109 0.67 0.259054
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.