miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 27898 0.68 0.240192
Target:  5'- gGCG-CGGCCGgcGCCAcCGC-GGGCa- -3'
miRNA:   3'- -CGCgGCUGGCuuCGGU-GCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 27828 0.66 0.338567
Target:  5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3'
miRNA:   3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27827 0.66 0.300379
Target:  5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3'
miRNA:   3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 27769 0.67 0.27229
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 27519 0.66 0.307742
Target:  5'- cGCGCUGGCaua--CCAgCGcCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGgcuucGGU-GC-GUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 27435 0.66 0.330655
Target:  5'- cGCGCCcggcGGCCGcAGGCCcugGCGCuGGuauGCCa -3'
miRNA:   3'- -CGCGG----CUGGC-UUCGG---UGCGuCC---CGGa -5'
26658 3' -61.9 NC_005808.1 + 26982 0.66 0.338567
Target:  5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3'
miRNA:   3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 26327 0.7 0.166854
Target:  5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3'
miRNA:   3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 25671 0.73 0.108128
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 25349 0.66 0.338567
Target:  5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3'
miRNA:   3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 25149 0.67 0.286062
Target:  5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3'
miRNA:   3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 24813 0.67 0.259054
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26658 3' -61.9 NC_005808.1 + 24562 0.66 0.330655
Target:  5'- cGCGgCGAUggCGAggccGGCCACGgucGGGCCg -3'
miRNA:   3'- -CGCgGCUG--GCU----UCGGUGCgu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24506 0.75 0.074054
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 24419 0.71 0.138268
Target:  5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3'
miRNA:   3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 24231 0.67 0.259054
Target:  5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3'
miRNA:   3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 23789 0.69 0.205911
Target:  5'- cGCGCC-ACCGAGGCaCugGCccgcgaccuGGGCgCUa -3'
miRNA:   3'- -CGCGGcUGGCUUCG-GugCGu--------CCCG-GA- -5'
26658 3' -61.9 NC_005808.1 + 23753 0.7 0.180656
Target:  5'- aGCGCCauGCCGgcGCCAC-C-GGGCCg -3'
miRNA:   3'- -CGCGGc-UGGCuuCGGUGcGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 23611 0.68 0.234165
Target:  5'- aUGUCGGCCGAGGCCAucgacCGCGuGcGCCg -3'
miRNA:   3'- cGCGGCUGGCUUCGGU-----GCGUcC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 22852 0.71 0.134572
Target:  5'- aUGCUGACCG--GCC-CGCAGGGCg- -3'
miRNA:   3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.