miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 22836 0.66 0.330655
Target:  5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3'
miRNA:   3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 21937 0.67 0.286062
Target:  5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3'
miRNA:   3'- cGCGGCUGGcUUCGGugcGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 21349 0.68 0.255188
Target:  5'- aCGCCGACCGcuGGGCCGacacuuacgccgacaUGCuGGGCa- -3'
miRNA:   3'- cGCGGCUGGC--UUCGGU---------------GCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 21254 0.72 0.117419
Target:  5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3'
miRNA:   3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 20125 0.72 0.12745
Target:  5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3'
miRNA:   3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 19615 0.77 0.053668
Target:  5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3'
miRNA:   3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 19115 0.71 0.145943
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 19059 0.69 0.188919
Target:  5'- gGCGUCGaucagcguguccucGCCGAGGUCACGCGauugcaGGCCg -3'
miRNA:   3'- -CGCGGC--------------UGGCUUCGGUGCGUc-----CCGGa -5'
26658 3' -61.9 NC_005808.1 + 18757 0.72 0.113929
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 18451 0.66 0.315242
Target:  5'- cCGCC-ACCGgcGCCAUcgGCAaGGCCa -3'
miRNA:   3'- cGCGGcUGGCuuCGGUG--CGUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 18082 0.67 0.259054
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 17448 0.72 0.124021
Target:  5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3'
miRNA:   3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 17074 0.71 0.142058
Target:  5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3'
miRNA:   3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 16650 0.66 0.318281
Target:  5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 16584 0.68 0.240192
Target:  5'- cGCGCCGGaCGAGGCCgaccACGCGaugguguuGGcGCCg -3'
miRNA:   3'- -CGCGGCUgGCUUCGG----UGCGU--------CC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 16355 0.71 0.14872
Target:  5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3'
miRNA:   3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 16202 0.7 0.180656
Target:  5'- aGCGUgCGGCCGcAGuCCuACGuCGGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGCuUC-GG-UGC-GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 15459 0.66 0.307742
Target:  5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3'
miRNA:   3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 14809 0.66 0.318281
Target:  5'- cGCGCCaaugcugcgcguacuGcCUGggGCUaccggGCGCAGGGCa- -3'
miRNA:   3'- -CGCGG---------------CuGGCuuCGG-----UGCGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 14283 0.67 0.27229
Target:  5'- cGCGCC-AagGAAGCCGCGCuGcGCCUg -3'
miRNA:   3'- -CGCGGcUggCUUCGGUGCGuCcCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.