miRNA display CGI


Results 61 - 80 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 40901 0.7 0.171346
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12275 0.7 0.175946
Target:  5'- uGCGucCCGACCaGggGCaggcaGCGC-GGGCCg -3'
miRNA:   3'- -CGC--GGCUGG-CuuCGg----UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 16202 0.7 0.180656
Target:  5'- aGCGUgCGGCCGcAGuCCuACGuCGGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGCuUC-GG-UGC-GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 3832 0.69 0.190412
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26658 3' -61.9 NC_005808.1 + 33680 0.69 0.200627
Target:  5'- aGCGgUGGCCGu-GCCGCcaGCGGuGGCCg -3'
miRNA:   3'- -CGCgGCUGGCuuCGGUG--CGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 36115 0.69 0.205911
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 35520 0.71 0.142058
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 22852 0.71 0.134572
Target:  5'- aUGCUGACCG--GCC-CGCAGGGCg- -3'
miRNA:   3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 8178 0.76 0.058433
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 750 0.76 0.065428
Target:  5'- gGCGcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC-GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 24506 0.75 0.074054
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8920 0.74 0.079654
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 12359 0.73 0.09416
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12081 0.73 0.09416
Target:  5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3'
miRNA:   3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 32918 0.73 0.09953
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5'
26658 3' -61.9 NC_005808.1 + 25671 0.73 0.108128
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 4942 0.73 0.111145
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 18757 0.72 0.113929
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 29177 0.72 0.117419
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 21254 0.72 0.117419
Target:  5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3'
miRNA:   3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.