miRNA display CGI


Results 101 - 120 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 750 0.76 0.065428
Target:  5'- gGCGcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC-GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8178 0.76 0.058433
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 19115 0.71 0.145943
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 16355 0.71 0.14872
Target:  5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3'
miRNA:   3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 9943 0.71 0.154004
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 4698 0.68 0.240192
Target:  5'- uUGCCGACCcugcGGCaGCGC-GGGCCa -3'
miRNA:   3'- cGCGGCUGGcu--UCGgUGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27898 0.68 0.240192
Target:  5'- gGCG-CGGCCGgcGCCAcCGC-GGGCa- -3'
miRNA:   3'- -CGCgGCUGGCuuCGGU-GCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 23611 0.68 0.234165
Target:  5'- aUGUCGGCCGAGGCCAucgacCGCGuGcGCCg -3'
miRNA:   3'- cGCGGCUGGCUUCGGU-----GCGUcC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 23789 0.69 0.205911
Target:  5'- cGCGCC-ACCGAGGCaCugGCccgcgaccuGGGCgCUa -3'
miRNA:   3'- -CGCGGcUGGCUUCG-GugCGu--------CCCG-GA- -5'
26658 3' -61.9 NC_005808.1 + 36115 0.69 0.205911
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 33680 0.69 0.200627
Target:  5'- aGCGgUGGCCGu-GCCGCcaGCGGuGGCCg -3'
miRNA:   3'- -CGCgGCUGGCuuCGGUG--CGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 3832 0.69 0.190412
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26658 3' -61.9 NC_005808.1 + 16202 0.7 0.180656
Target:  5'- aGCGUgCGGCCGcAGuCCuACGuCGGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGCuUC-GG-UGC-GUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 12275 0.7 0.175946
Target:  5'- uGCGucCCGACCaGggGCaggcaGCGC-GGGCCg -3'
miRNA:   3'- -CGC--GGCUGG-CuuCGg----UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 40901 0.7 0.171346
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 8465 0.7 0.166854
Target:  5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3'
miRNA:   3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 26327 0.7 0.166854
Target:  5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3'
miRNA:   3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 37538 0.7 0.158184
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 8718 0.7 0.157762
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 10928 1.09 0.000152
Target:  5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.