miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 14283 0.67 0.27229
Target:  5'- cGCGCC-AagGAAGCCGCGCuGcGCCUg -3'
miRNA:   3'- -CGCGGcUggCUUCGGUGCGuCcCGGA- -5'
26658 3' -61.9 NC_005808.1 + 3832 0.69 0.190412
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26658 3' -61.9 NC_005808.1 + 18757 0.72 0.113929
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 29442 0.67 0.27229
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26658 3' -61.9 NC_005808.1 + 4942 0.73 0.111145
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 36911 0.66 0.300379
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 21254 0.72 0.117419
Target:  5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3'
miRNA:   3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 40701 0.66 0.300379
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33272 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33416 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33560 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33608 0.67 0.279109
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 39902 0.67 0.277049
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26658 3' -61.9 NC_005808.1 + 24231 0.67 0.259054
Target:  5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3'
miRNA:   3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 42262 0.67 0.259054
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27898 0.68 0.240192
Target:  5'- gGCG-CGGCCGgcGCCAcCGC-GGGCa- -3'
miRNA:   3'- -CGCgGCUGGCuuCGGU-GCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 36115 0.69 0.205911
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 40901 0.7 0.171346
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 37538 0.7 0.158184
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 19115 0.71 0.145943
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.