miRNA display CGI


Results 81 - 100 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 30418 0.66 0.32288
Target:  5'- uCGCuCGGCauggCGAugAGCgCGgGCAGGGCCUc -3'
miRNA:   3'- cGCG-GCUG----GCU--UCG-GUgCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 10891 0.66 0.328308
Target:  5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3'
miRNA:   3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 22836 0.66 0.330655
Target:  5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3'
miRNA:   3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 27828 0.66 0.338567
Target:  5'- cGCGCUGcCCGcGGUgGCGCc-GGCCg -3'
miRNA:   3'- -CGCGGCuGGCuUCGgUGCGucCCGGa -5'
26658 3' -61.9 NC_005808.1 + 29016 0.66 0.338567
Target:  5'- -aGgCGACCaGgcGCCGCGCuucGGCCa -3'
miRNA:   3'- cgCgGCUGG-CuuCGGUGCGuc-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 24562 0.66 0.330655
Target:  5'- cGCGgCGAUggCGAggccGGCCACGgucGGGCCg -3'
miRNA:   3'- -CGCgGCUG--GCU----UCGGUGCgu-CCCGGa -5'
26658 3' -61.9 NC_005808.1 + 25349 0.66 0.338567
Target:  5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3'
miRNA:   3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 7557 0.66 0.330655
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 37989 0.66 0.315242
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26658 3' -61.9 NC_005808.1 + 15459 0.66 0.307742
Target:  5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3'
miRNA:   3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 30096 0.66 0.303308
Target:  5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3'
miRNA:   3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 13164 0.68 0.240192
Target:  5'- aUGUCGGCCaGugucGGCCGCGCuGGGCg- -3'
miRNA:   3'- cGCGGCUGG-Cu---UCGGUGCGuCCCGga -5'
26658 3' -61.9 NC_005808.1 + 31709 0.68 0.240192
Target:  5'- cCGCCuGACCagcccGCCGCGCGcGGGCUUu -3'
miRNA:   3'- cGCGG-CUGGcuu--CGGUGCGU-CCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 16584 0.68 0.240192
Target:  5'- cGCGCCGGaCGAGGCCgaccACGCGaugguguuGGcGCCg -3'
miRNA:   3'- -CGCGGCUgGCUUCGG----UGCGU--------CC-CGGa -5'
26658 3' -61.9 NC_005808.1 + 13347 0.68 0.252636
Target:  5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5'
26658 3' -61.9 NC_005808.1 + 18082 0.67 0.259054
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 28109 0.67 0.259054
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26658 3' -61.9 NC_005808.1 + 6642 0.67 0.27229
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 11520 0.67 0.27229
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26658 3' -61.9 NC_005808.1 + 26982 0.66 0.338567
Target:  5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3'
miRNA:   3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.