miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26658 3' -61.9 NC_005808.1 + 30096 0.66 0.303308
Target:  5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3'
miRNA:   3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5'
26658 3' -61.9 NC_005808.1 + 36911 0.66 0.300379
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 40701 0.66 0.300379
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26658 3' -61.9 NC_005808.1 + 27827 0.66 0.300379
Target:  5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3'
miRNA:   3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5'
26658 3' -61.9 NC_005808.1 + 8206 0.66 0.300379
Target:  5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3'
miRNA:   3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33464 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33272 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 36313 0.67 0.293153
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 33416 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33368 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33560 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33512 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 33320 0.67 0.293153
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 10521 0.67 0.293152
Target:  5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3'
miRNA:   3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5'
26658 3' -61.9 NC_005808.1 + 37491 0.67 0.293152
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26658 3' -61.9 NC_005808.1 + 32368 0.67 0.293152
Target:  5'- uCGCCG-CCGAggccccGGCCGCccaGCAGGaaGCCa -3'
miRNA:   3'- cGCGGCuGGCU------UCGGUG---CGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 35822 0.67 0.293152
Target:  5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3'
miRNA:   3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5'
26658 3' -61.9 NC_005808.1 + 28672 0.67 0.291011
Target:  5'- cGCGCCcgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3'
miRNA:   3'- -CGCGG--------------CUGGCUucGGUGCG----UC-CCGGa -5'
26658 3' -61.9 NC_005808.1 + 21937 0.67 0.286062
Target:  5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3'
miRNA:   3'- cGCGGCUGGcUUCGGugcGUCCCGga -5'
26658 3' -61.9 NC_005808.1 + 25149 0.67 0.286062
Target:  5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3'
miRNA:   3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.