Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 18164 | 0.68 | 0.287633 |
Target: 5'- gGCGCGaa-GGCGUccugguucGCGCcggcuucGGCGGCCCa -3' miRNA: 3'- -CGCGUgcgUUGCA--------CGCGu------CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24164 | 0.68 | 0.266963 |
Target: 5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3' miRNA: 3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 1357 | 0.68 | 0.273716 |
Target: 5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3' miRNA: 3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39836 | 0.68 | 0.273716 |
Target: 5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3' miRNA: 3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 18124 | 0.68 | 0.302101 |
Target: 5'- -aGCACGCAcCccGCGCcGGUaaGGCCCc -3' miRNA: 3'- cgCGUGCGUuGcaCGCGuCCG--CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 26046 | 0.68 | 0.273716 |
Target: 5'- aGCcCGCGCGGCGggcgcgcuccaUGCGCucggcgaacucgGGGCGGgCCu -3' miRNA: 3'- -CGcGUGCGUUGC-----------ACGCG------------UCCGCCgGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 2466 | 0.68 | 0.273716 |
Target: 5'- uUGCACaaGGCGUGCuGCacaAGGCGGUCUu -3' miRNA: 3'- cGCGUGcgUUGCACG-CG---UCCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 334 | 0.68 | 0.280606 |
Target: 5'- -gGCugGCGgugGCGUcGCGCagcAGGCcguccgccaGGCCCg -3' miRNA: 3'- cgCGugCGU---UGCA-CGCG---UCCG---------CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 2022 | 0.68 | 0.302101 |
Target: 5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3' miRNA: 3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 40836 | 0.68 | 0.294798 |
Target: 5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3' miRNA: 3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28724 | 0.68 | 0.294798 |
Target: 5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3' miRNA: 3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 34293 | 0.68 | 0.294798 |
Target: 5'- aGCaGCGCGCAcCGcugGCugcacugccccgGCAGcGUGGCCCu -3' miRNA: 3'- -CG-CGUGCGUuGCa--CG------------CGUC-CGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 20611 | 0.68 | 0.294075 |
Target: 5'- cGC-CAgGCGGCGU-CGCAGGUcggugucGGCCUg -3' miRNA: 3'- -CGcGUgCGUUGCAcGCGUCCG-------CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 2417 | 0.68 | 0.287633 |
Target: 5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3' miRNA: 3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 37955 | 0.68 | 0.287633 |
Target: 5'- ---gACGCGAUGgccGaCGCAGcGUGGCCCa -3' miRNA: 3'- cgcgUGCGUUGCa--C-GCGUC-CGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24398 | 0.68 | 0.286925 |
Target: 5'- uCGCuGCGCAA-GUugaagaaGCGCAGcCGGCCCg -3' miRNA: 3'- cGCG-UGCGUUgCA-------CGCGUCcGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 1081 | 0.68 | 0.285511 |
Target: 5'- aCGCGCGCGGuagauugccuuggcCGUGuCGCGcGGCaugucgcgcaucGGCCCg -3' miRNA: 3'- cGCGUGCGUU--------------GCAC-GCGU-CCG------------CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39660 | 0.69 | 0.241291 |
Target: 5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3' miRNA: 3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25486 | 0.69 | 0.24751 |
Target: 5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3' miRNA: 3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27538 | 0.69 | 0.241291 |
Target: 5'- uCGCGUGguGCGUGCGC-GGCGcGCUg -3' miRNA: 3'- cGCGUGCguUGCACGCGuCCGC-CGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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