Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 29496 | 0.69 | 0.229245 |
Target: 5'- cUGgGCGCGACGUGCGagcgcguGGGCaacgcGCCCa -3' miRNA: 3'- cGCgUGCGUUGCACGCg------UCCGc----CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 34481 | 0.69 | 0.260344 |
Target: 5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3' miRNA: 3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27538 | 0.69 | 0.241291 |
Target: 5'- uCGCGUGguGCGUGCGC-GGCGcGCUg -3' miRNA: 3'- cGCGUGCguUGCACGCGuCCGC-CGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 9382 | 0.69 | 0.229245 |
Target: 5'- cCGCGC-CGACGUGCGCcgccAGGUcGCCg -3' miRNA: 3'- cGCGUGcGUUGCACGCG----UCCGcCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27192 | 0.69 | 0.260344 |
Target: 5'- aUGCGCGCGGCGUcaGCuuuGCAGGCuaaGGCaCUg -3' miRNA: 3'- cGCGUGCGUUGCA--CG---CGUCCG---CCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 7472 | 0.69 | 0.24751 |
Target: 5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3' miRNA: 3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25486 | 0.69 | 0.24751 |
Target: 5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3' miRNA: 3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39660 | 0.69 | 0.241291 |
Target: 5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3' miRNA: 3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 36147 | 0.69 | 0.241291 |
Target: 5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3' miRNA: 3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8392 | 0.69 | 0.229245 |
Target: 5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3' miRNA: 3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24071 | 0.69 | 0.24751 |
Target: 5'- cGCGCACaGUAGCGgcgaccGCGCGGGgcaCGGgcacCCCg -3' miRNA: 3'- -CGCGUG-CGUUGCa-----CGCGUCC---GCC----GGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25902 | 0.7 | 0.217711 |
Target: 5'- -aGCAUGgAACugaccgGCGCcaacGGCGGCCCg -3' miRNA: 3'- cgCGUGCgUUGca----CGCGu---CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8902 | 0.7 | 0.212132 |
Target: 5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3' miRNA: 3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24464 | 0.7 | 0.223414 |
Target: 5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3' miRNA: 3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24792 | 0.7 | 0.212132 |
Target: 5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3' miRNA: 3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 9282 | 0.7 | 0.201343 |
Target: 5'- gGCGCGcCGCAgaACGUGCGCcGcGCcGCCg -3' miRNA: 3'- -CGCGU-GCGU--UGCACGCGuC-CGcCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 4097 | 0.7 | 0.195614 |
Target: 5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3' miRNA: 3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 16061 | 0.7 | 0.217711 |
Target: 5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3' miRNA: 3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25760 | 0.7 | 0.223414 |
Target: 5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3' miRNA: 3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 6372 | 0.7 | 0.223414 |
Target: 5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3' miRNA: 3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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