miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 36147 0.69 0.241291
Target:  5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3'
miRNA:   3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 27538 0.69 0.241291
Target:  5'- uCGCGUGguGCGUGCGC-GGCGcGCUg -3'
miRNA:   3'- cGCGUGCguUGCACGCGuCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 7472 0.69 0.24751
Target:  5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3'
miRNA:   3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24071 0.69 0.24751
Target:  5'- cGCGCACaGUAGCGgcgaccGCGCGGGgcaCGGgcacCCCg -3'
miRNA:   3'- -CGCGUG-CGUUGCa-----CGCGUCC---GCC----GGG- -5'
26659 3' -60.5 NC_005808.1 + 25486 0.69 0.24751
Target:  5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3'
miRNA:   3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 7175 0.69 0.25386
Target:  5'- gGCauCACGCAGuccauCGUGCGCguGGGCGcGCCg -3'
miRNA:   3'- -CGc-GUGCGUU-----GCACGCG--UCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 36488 0.69 0.25386
Target:  5'- aGCGCAggccggucuugcCGCAGCGUuuGCAGGUgacGGCgCg -3'
miRNA:   3'- -CGCGU------------GCGUUGCAcgCGUCCG---CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 34481 0.69 0.260344
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27192 0.69 0.260344
Target:  5'- aUGCGCGCGGCGUcaGCuuuGCAGGCuaaGGCaCUg -3'
miRNA:   3'- cGCGUGCGUUGCA--CG---CGUCCG---CCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 24164 0.68 0.266963
Target:  5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3'
miRNA:   3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5'
26659 3' -60.5 NC_005808.1 + 31301 0.68 0.266963
Target:  5'- aGC-CugGCGACc-GCGU-GGUGGCCCg -3'
miRNA:   3'- -CGcGugCGUUGcaCGCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 4190 0.68 0.266963
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 27922 0.68 0.270999
Target:  5'- aGCGCGgacacguucuugaGCAGCG-GCGCGGcCGGCgCCa -3'
miRNA:   3'- -CGCGUg------------CGUUGCaCGCGUCcGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 22593 0.68 0.272355
Target:  5'- cGCGCGCGCugcGCGUGCucGCugcggggaugauGGCGggcaugaccaGCCCa -3'
miRNA:   3'- -CGCGUGCGu--UGCACG--CGu-----------CCGC----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 26046 0.68 0.273716
Target:  5'- aGCcCGCGCGGCGggcgcgcuccaUGCGCucggcgaacucgGGGCGGgCCu -3'
miRNA:   3'- -CGcGUGCGUUGC-----------ACGCG------------UCCGCCgGG- -5'
26659 3' -60.5 NC_005808.1 + 2466 0.68 0.273716
Target:  5'- uUGCACaaGGCGUGCuGCacaAGGCGGUCUu -3'
miRNA:   3'- cGCGUGcgUUGCACG-CG---UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 2372 0.68 0.273716
Target:  5'- cUGCACGUGgcagacgcccGCGUGCGUacccuugucaGGGCGGCa- -3'
miRNA:   3'- cGCGUGCGU----------UGCACGCG----------UCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 39836 0.68 0.273716
Target:  5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3'
miRNA:   3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 1357 0.68 0.273716
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26659 3' -60.5 NC_005808.1 + 334 0.68 0.280606
Target:  5'- -gGCugGCGgugGCGUcGCGCagcAGGCcguccgccaGGCCCg -3'
miRNA:   3'- cgCGugCGU---UGCA-CGCG---UCCG---------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.