miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 1081 0.68 0.285511
Target:  5'- aCGCGCGCGGuagauugccuuggcCGUGuCGCGcGGCaugucgcgcaucGGCCCg -3'
miRNA:   3'- cGCGUGCGUU--------------GCAC-GCGU-CCG------------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24398 0.68 0.286925
Target:  5'- uCGCuGCGCAA-GUugaagaaGCGCAGcCGGCCCg -3'
miRNA:   3'- cGCG-UGCGUUgCA-------CGCGUCcGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 2417 0.68 0.287633
Target:  5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 18164 0.68 0.287633
Target:  5'- gGCGCGaa-GGCGUccugguucGCGCcggcuucGGCGGCCCa -3'
miRNA:   3'- -CGCGUgcgUUGCA--------CGCGu------CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 37955 0.68 0.287633
Target:  5'- ---gACGCGAUGgccGaCGCAGcGUGGCCCa -3'
miRNA:   3'- cgcgUGCGUUGCa--C-GCGUC-CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 20922 0.68 0.287633
Target:  5'- gGCGCGCGC--CGUcGUGCAGuCGGUCa -3'
miRNA:   3'- -CGCGUGCGuuGCA-CGCGUCcGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21839 0.68 0.287633
Target:  5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3'
miRNA:   3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 20611 0.68 0.294075
Target:  5'- cGC-CAgGCGGCGU-CGCAGGUcggugucGGCCUg -3'
miRNA:   3'- -CGcGUgCGUUGCAcGCGUCCG-------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 34293 0.68 0.294798
Target:  5'- aGCaGCGCGCAcCGcugGCugcacugccccgGCAGcGUGGCCCu -3'
miRNA:   3'- -CG-CGUGCGUuGCa--CG------------CGUC-CGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 28724 0.68 0.294798
Target:  5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3'
miRNA:   3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 40836 0.68 0.294798
Target:  5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3'
miRNA:   3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 16629 0.68 0.294798
Target:  5'- cGCGuCGCGCuacAACGUcuauaaggaGCaAGGCGGCCUg -3'
miRNA:   3'- -CGC-GUGCG---UUGCAcg-------CG-UCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 32468 0.68 0.302101
Target:  5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3'
miRNA:   3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 2022 0.68 0.302101
Target:  5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3'
miRNA:   3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 18124 0.68 0.302101
Target:  5'- -aGCACGCAcCccGCGCcGGUaaGGCCCc -3'
miRNA:   3'- cgCGUGCGUuGcaCGCGuCCG--CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 26343 0.68 0.305061
Target:  5'- uCGCGCGCGAUGcGCgagccgaccaggccgGCGGGU-GCCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCG---------------CGUCCGcCGGG- -5'
26659 3' -60.5 NC_005808.1 + 4581 0.67 0.309542
Target:  5'- -aGCACGCcACGUuCaCGGGCGccGCCCg -3'
miRNA:   3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 23834 0.67 0.309542
Target:  5'- uGCgGCAC-CGGCGUGaccaGCAGGCaGGCg- -3'
miRNA:   3'- -CG-CGUGcGUUGCACg---CGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 18744 0.67 0.309542
Target:  5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGccGCCCc -3'
miRNA:   3'- cgCGuGCGUugCACG------------CGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 41608 0.67 0.309542
Target:  5'- gGCGCGgGCAGCGggcugacgGUGaaGGGCuGGCUCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-------CGCg-UCCG-CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.