miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 17802 0.66 0.373199
Target:  5'- aGCGCGCGCAguauuccgccugcACGgaacccucGgGCGGGUugauGCCCg -3'
miRNA:   3'- -CGCGUGCGU-------------UGCa-------CgCGUCCGc---CGGG- -5'
26659 3' -60.5 NC_005808.1 + 18066 0.67 0.317123
Target:  5'- gGCGCGgGguGCGUGC-UGGGCcGCCg -3'
miRNA:   3'- -CGCGUgCguUGCACGcGUCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 18124 0.68 0.302101
Target:  5'- -aGCACGCAcCccGCGCcGGUaaGGCCCc -3'
miRNA:   3'- cgCGUGCGUuGcaCGCGuCCG--CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 18164 0.68 0.287633
Target:  5'- gGCGCGaa-GGCGUccugguucGCGCcggcuucGGCGGCCCa -3'
miRNA:   3'- -CGCGUgcgUUGCA--------CGCGu------CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 18744 0.67 0.309542
Target:  5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGccGCCCc -3'
miRNA:   3'- cgCGuGCGUugCACG------------CGUCCGC--CGGG- -5'
26659 3' -60.5 NC_005808.1 + 18845 0.73 0.120742
Target:  5'- cGCgGCAUGUAGaagGC-CGGGCGGCCCa -3'
miRNA:   3'- -CG-CGUGCGUUgcaCGcGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 20611 0.68 0.294075
Target:  5'- cGC-CAgGCGGCGU-CGCAGGUcggugucGGCCUg -3'
miRNA:   3'- -CGcGUgCGUUGCAcGCGUCCG-------CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 20922 0.68 0.287633
Target:  5'- gGCGCGCGC--CGUcGUGCAGuCGGUCa -3'
miRNA:   3'- -CGCGUGCGuuGCA-CGCGUCcGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21406 0.71 0.186055
Target:  5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3'
miRNA:   3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21839 0.68 0.287633
Target:  5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3'
miRNA:   3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 21935 0.66 0.397799
Target:  5'- cGUGCGCcagcuacaacaugaGCAAC-UGCGCaAGGCgcaGGCCa -3'
miRNA:   3'- -CGCGUG--------------CGUUGcACGCG-UCCG---CCGGg -5'
26659 3' -60.5 NC_005808.1 + 22593 0.68 0.272355
Target:  5'- cGCGCGCGCugcGCGUGCucGCugcggggaugauGGCGggcaugaccaGCCCa -3'
miRNA:   3'- -CGCGUGCGu--UGCACG--CGu-----------CCGC----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 22905 0.67 0.309542
Target:  5'- aGCGCGCGCuguCGgcUGUcgGCAGcGCGGCg- -3'
miRNA:   3'- -CGCGUGCGuu-GC--ACG--CGUC-CGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 23523 0.66 0.357105
Target:  5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3'
miRNA:   3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 23834 0.67 0.309542
Target:  5'- uGCgGCAC-CGGCGUGaccaGCAGGCaGGCg- -3'
miRNA:   3'- -CG-CGUGcGUUGCACg---CGUCCG-CCGgg -5'
26659 3' -60.5 NC_005808.1 + 24071 0.69 0.24751
Target:  5'- cGCGCACaGUAGCGgcgaccGCGCGGGgcaCGGgcacCCCg -3'
miRNA:   3'- -CGCGUG-CGUUGCa-----CGCGUCC---GCC----GGG- -5'
26659 3' -60.5 NC_005808.1 + 24117 0.66 0.360453
Target:  5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3'
miRNA:   3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24164 0.68 0.266963
Target:  5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3'
miRNA:   3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5'
26659 3' -60.5 NC_005808.1 + 24224 0.66 0.400495
Target:  5'- -aGCGCGCAGCcgucgagGCGCuGGGCcaGGCgCg -3'
miRNA:   3'- cgCGUGCGUUGca-----CGCG-UCCG--CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 24398 0.68 0.286925
Target:  5'- uCGCuGCGCAA-GUugaagaaGCGCAGcCGGCCCg -3'
miRNA:   3'- cGCG-UGCGUUgCA-------CGCGUCcGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.