miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 24464 0.7 0.223414
Target:  5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3'
miRNA:   3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5'
26659 3' -60.5 NC_005808.1 + 24555 0.74 0.114264
Target:  5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3'
miRNA:   3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5'
26659 3' -60.5 NC_005808.1 + 24623 0.66 0.382739
Target:  5'- aGCgGCACGUcgaaccacauGGCGUGC-C-GGCGGgCCa -3'
miRNA:   3'- -CG-CGUGCG----------UUGCACGcGuCCGCCgGG- -5'
26659 3' -60.5 NC_005808.1 + 24792 0.7 0.212132
Target:  5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3'
miRNA:   3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 25144 0.66 0.382739
Target:  5'- cGgGCGCGCuGCGcUG-GguGGCGaugcuGCCCg -3'
miRNA:   3'- -CgCGUGCGuUGC-ACgCguCCGC-----CGGG- -5'
26659 3' -60.5 NC_005808.1 + 25486 0.69 0.24751
Target:  5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3'
miRNA:   3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 25760 0.7 0.223414
Target:  5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3'
miRNA:   3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5'
26659 3' -60.5 NC_005808.1 + 25850 0.66 0.400495
Target:  5'- -aGCGCGC--CGcGCGCAucGCGGCCa -3'
miRNA:   3'- cgCGUGCGuuGCaCGCGUc-CGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 25902 0.7 0.217711
Target:  5'- -aGCAUGgAACugaccgGCGCcaacGGCGGCCCg -3'
miRNA:   3'- cgCGUGCgUUGca----CGCGu---CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 26046 0.68 0.273716
Target:  5'- aGCcCGCGCGGCGggcgcgcuccaUGCGCucggcgaacucgGGGCGGgCCu -3'
miRNA:   3'- -CGcGUGCGUUGC-----------ACGCG------------UCCGCCgGG- -5'
26659 3' -60.5 NC_005808.1 + 26117 0.66 0.365515
Target:  5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3'
miRNA:   3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5'
26659 3' -60.5 NC_005808.1 + 26343 0.68 0.305061
Target:  5'- uCGCGCGCGAUGcGCgagccgaccaggccgGCGGGU-GCCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCG---------------CGUCCGcCGGG- -5'
26659 3' -60.5 NC_005808.1 + 26818 0.76 0.075131
Target:  5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3'
miRNA:   3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27192 0.69 0.260344
Target:  5'- aUGCGCGCGGCGUcaGCuuuGCAGGCuaaGGCaCUg -3'
miRNA:   3'- cGCGUGCGUUGCA--CG---CGUCCG---CCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 27418 0.72 0.158529
Target:  5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 27424 0.66 0.357105
Target:  5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3'
miRNA:   3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27479 0.76 0.077282
Target:  5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3'
miRNA:   3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 27538 0.69 0.241291
Target:  5'- uCGCGUGguGCGUGCGC-GGCGcGCUg -3'
miRNA:   3'- cGCGUGCguUGCACGCGuCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 27574 0.71 0.167269
Target:  5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3'
miRNA:   3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 27824 0.73 0.120742
Target:  5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.