Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 25486 | 0.69 | 0.24751 |
Target: 5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3' miRNA: 3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25144 | 0.66 | 0.382739 |
Target: 5'- cGgGCGCGCuGCGcUG-GguGGCGaugcuGCCCg -3' miRNA: 3'- -CgCGUGCGuUGC-ACgCguCCGC-----CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24792 | 0.7 | 0.212132 |
Target: 5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3' miRNA: 3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24623 | 0.66 | 0.382739 |
Target: 5'- aGCgGCACGUcgaaccacauGGCGUGC-C-GGCGGgCCa -3' miRNA: 3'- -CG-CGUGCG----------UUGCACGcGuCCGCCgGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24555 | 0.74 | 0.114264 |
Target: 5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3' miRNA: 3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24464 | 0.7 | 0.223414 |
Target: 5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3' miRNA: 3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24398 | 0.68 | 0.286925 |
Target: 5'- uCGCuGCGCAA-GUugaagaaGCGCAGcCGGCCCg -3' miRNA: 3'- cGCG-UGCGUUgCA-------CGCGUCcGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24224 | 0.66 | 0.400495 |
Target: 5'- -aGCGCGCAGCcgucgagGCGCuGGGCcaGGCgCg -3' miRNA: 3'- cgCGUGCGUUGca-----CGCG-UCCG--CCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24164 | 0.68 | 0.266963 |
Target: 5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3' miRNA: 3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24117 | 0.66 | 0.360453 |
Target: 5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3' miRNA: 3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24071 | 0.69 | 0.24751 |
Target: 5'- cGCGCACaGUAGCGgcgaccGCGCGGGgcaCGGgcacCCCg -3' miRNA: 3'- -CGCGUG-CGUUGCa-----CGCGUCC---GCC----GGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 23834 | 0.67 | 0.309542 |
Target: 5'- uGCgGCAC-CGGCGUGaccaGCAGGCaGGCg- -3' miRNA: 3'- -CG-CGUGcGUUGCACg---CGUCCG-CCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 23523 | 0.66 | 0.357105 |
Target: 5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3' miRNA: 3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 22905 | 0.67 | 0.309542 |
Target: 5'- aGCGCGCGCuguCGgcUGUcgGCAGcGCGGCg- -3' miRNA: 3'- -CGCGUGCGuu-GC--ACG--CGUC-CGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 22593 | 0.68 | 0.272355 |
Target: 5'- cGCGCGCGCugcGCGUGCucGCugcggggaugauGGCGggcaugaccaGCCCa -3' miRNA: 3'- -CGCGUGCGu--UGCACG--CGu-----------CCGC----------CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 21935 | 0.66 | 0.397799 |
Target: 5'- cGUGCGCcagcuacaacaugaGCAAC-UGCGCaAGGCgcaGGCCa -3' miRNA: 3'- -CGCGUG--------------CGUUGcACGCG-UCCG---CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 21839 | 0.68 | 0.287633 |
Target: 5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3' miRNA: 3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 21406 | 0.71 | 0.186055 |
Target: 5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3' miRNA: 3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 20922 | 0.68 | 0.287633 |
Target: 5'- gGCGCGCGC--CGUcGUGCAGuCGGUCa -3' miRNA: 3'- -CGCGUGCGuuGCA-CGCGUCcGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 20611 | 0.68 | 0.294075 |
Target: 5'- cGC-CAgGCGGCGU-CGCAGGUcggugucGGCCUg -3' miRNA: 3'- -CGcGUgCGUUGCAcGCGUCCG-------CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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