Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 9324 | 0.75 | 0.088946 |
Target: 5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3' miRNA: 3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27479 | 0.76 | 0.077282 |
Target: 5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3' miRNA: 3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 37219 | 0.77 | 0.069806 |
Target: 5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3' miRNA: 3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 507 | 0.77 | 0.06161 |
Target: 5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3' miRNA: 3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 31044 | 0.78 | 0.0582 |
Target: 5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3' miRNA: 3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8750 | 0.72 | 0.150202 |
Target: 5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3' miRNA: 3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39762 | 0.72 | 0.150202 |
Target: 5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3' miRNA: 3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39660 | 0.69 | 0.241291 |
Target: 5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3' miRNA: 3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 36147 | 0.69 | 0.241291 |
Target: 5'- uGCGCGacgGCGACGccuuCGCGGGCGGUg- -3' miRNA: 3'- -CGCGUg--CGUUGCac--GCGUCCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8392 | 0.69 | 0.229245 |
Target: 5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3' miRNA: 3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25760 | 0.7 | 0.223414 |
Target: 5'- gGCGCGCugcugggcggcgGCAACGauggccgcgaUGCGCGcGGCGcGCUCg -3' miRNA: 3'- -CGCGUG------------CGUUGC----------ACGCGU-CCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 6372 | 0.7 | 0.223414 |
Target: 5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3' miRNA: 3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 16061 | 0.7 | 0.217711 |
Target: 5'- cGCGCACGUGGCcgcCGCGcGCGGCgCCg -3' miRNA: 3'- -CGCGUGCGUUGcacGCGUcCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 38391 | 0.7 | 0.217147 |
Target: 5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3' miRNA: 3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 4517 | 0.7 | 0.196129 |
Target: 5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3' miRNA: 3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 30424 | 0.71 | 0.186055 |
Target: 5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3' miRNA: 3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27574 | 0.71 | 0.167269 |
Target: 5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3' miRNA: 3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 41783 | 0.71 | 0.165931 |
Target: 5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3' miRNA: 3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27418 | 0.72 | 0.158529 |
Target: 5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3' miRNA: 3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 11503 | 0.72 | 0.158529 |
Target: 5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3' miRNA: 3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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