Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26659 | 3' | -60.5 | NC_005808.1 | + | 24792 | 0.7 | 0.212132 |
Target: 5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3' miRNA: 3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8902 | 0.7 | 0.212132 |
Target: 5'- cGCGCugGCccGCGU-UGC-GGCuGGCCCg -3' miRNA: 3'- -CGCGugCGu-UGCAcGCGuCCG-CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 25902 | 0.7 | 0.217711 |
Target: 5'- -aGCAUGgAACugaccgGCGCcaacGGCGGCCCg -3' miRNA: 3'- cgCGUGCgUUGca----CGCGu---CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 24464 | 0.7 | 0.223414 |
Target: 5'- uGCGCuucuucaacuuGCGCAGCGaguUGUGguGGCGaaugcgcgaaGCCCu -3' miRNA: 3'- -CGCG-----------UGCGUUGC---ACGCguCCGC----------CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 29496 | 0.69 | 0.229245 |
Target: 5'- cUGgGCGCGACGUGCGagcgcguGGGCaacgcGCCCa -3' miRNA: 3'- cGCgUGCGUUGCACGCg------UCCGc----CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 13632 | 0.71 | 0.167269 |
Target: 5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3' miRNA: 3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 41578 | 0.72 | 0.162846 |
Target: 5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3' miRNA: 3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 37538 | 0.82 | 0.028365 |
Target: 5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3' miRNA: 3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 27874 | 0.77 | 0.06161 |
Target: 5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3' miRNA: 3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 8114 | 0.77 | 0.065213 |
Target: 5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3' miRNA: 3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28332 | 0.77 | 0.069019 |
Target: 5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3' miRNA: 3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 26818 | 0.76 | 0.075131 |
Target: 5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3' miRNA: 3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 42140 | 0.74 | 0.117462 |
Target: 5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3' miRNA: 3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 28625 | 0.74 | 0.117462 |
Target: 5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3' miRNA: 3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 16125 | 0.74 | 0.118764 |
Target: 5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3' miRNA: 3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 39888 | 0.73 | 0.120742 |
Target: 5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3' miRNA: 3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 31775 | 0.73 | 0.124108 |
Target: 5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3' miRNA: 3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 38620 | 0.72 | 0.142275 |
Target: 5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3' miRNA: 3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 37246 | 0.72 | 0.14619 |
Target: 5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3' miRNA: 3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5' |
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26659 | 3' | -60.5 | NC_005808.1 | + | 34230 | 0.72 | 0.14619 |
Target: 5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3' miRNA: 3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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