miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 3' -60.5 NC_005808.1 + 35128 0.67 0.3327
Target:  5'- cGUGCGCucgGCGGCGUGCuCGaucuGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26659 3' -60.5 NC_005808.1 + 13632 0.71 0.167269
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 21406 0.71 0.186055
Target:  5'- uCGUugGCAACcuggGCGC-GGUGGCCg -3'
miRNA:   3'- cGCGugCGUUGca--CGCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 4097 0.7 0.195614
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 24792 0.7 0.212132
Target:  5'- cGCGCAgGC-GCG-GUGgAaGCGGCCCg -3'
miRNA:   3'- -CGCGUgCGuUGCaCGCgUcCGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 9382 0.69 0.229245
Target:  5'- cCGCGC-CGACGUGCGCcgccAGGUcGCCg -3'
miRNA:   3'- cGCGUGcGUUGCACGCG----UCCGcCGGg -5'
26659 3' -60.5 NC_005808.1 + 7796 0.69 0.235203
Target:  5'- uGCGCAgGaauggcaAGCG-GUGCAGGCGGUg- -3'
miRNA:   3'- -CGCGUgCg------UUGCaCGCGUCCGCCGgg -5'
26659 3' -60.5 NC_005808.1 + 36488 0.69 0.25386
Target:  5'- aGCGCAggccggucuugcCGCAGCGUuuGCAGGUgacGGCgCg -3'
miRNA:   3'- -CGCGU------------GCGUUGCAcgCGUCCG---CCGgG- -5'
26659 3' -60.5 NC_005808.1 + 25144 0.66 0.382739
Target:  5'- cGgGCGCGCuGCGcUG-GguGGCGaugcuGCCCg -3'
miRNA:   3'- -CgCGUGCGuUGC-ACgCguCCGC-----CGGG- -5'
26659 3' -60.5 NC_005808.1 + 34008 0.66 0.357105
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 20922 0.68 0.287633
Target:  5'- gGCGCGCGC--CGUcGUGCAGuCGGUCa -3'
miRNA:   3'- -CGCGUGCGuuGCA-CGCGUCcGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 32468 0.68 0.302101
Target:  5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3'
miRNA:   3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 6928 0.67 0.309542
Target:  5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3'
miRNA:   3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 30283 0.67 0.317123
Target:  5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3'
miRNA:   3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 5605 0.67 0.348013
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26659 3' -60.5 NC_005808.1 + 24117 0.66 0.360453
Target:  5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3'
miRNA:   3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5'
26659 3' -60.5 NC_005808.1 + 24623 0.66 0.382739
Target:  5'- aGCgGCACGUcgaaccacauGGCGUGC-C-GGCGGgCCa -3'
miRNA:   3'- -CG-CGUGCG----------UUGCACGcGuCCGCCgGG- -5'
26659 3' -60.5 NC_005808.1 + 1687 0.66 0.381865
Target:  5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3'
miRNA:   3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5'
26659 3' -60.5 NC_005808.1 + 25486 0.69 0.24751
Target:  5'- aGgGCGCGCu-CGUGCuugguCAGGgucaGGCCCg -3'
miRNA:   3'- -CgCGUGCGuuGCACGc----GUCCg---CCGGG- -5'
26659 3' -60.5 NC_005808.1 + 7472 0.69 0.24751
Target:  5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3'
miRNA:   3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.