miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26659 5' -50 NC_005808.1 + 15423 0.66 0.892448
Target:  5'- aCCGAGgUGaagcagCGCACGUccGAACCc- -3'
miRNA:   3'- -GGCUUgACga----GCGUGCAaaCUUGGuu -5'
26659 5' -50 NC_005808.1 + 34192 0.66 0.892448
Target:  5'- gCGAACUGCUCGCugccCGacacgUGGGCg-- -3'
miRNA:   3'- gGCUUGACGAGCGu---GCaa---ACUUGguu -5'
26659 5' -50 NC_005808.1 + 22870 0.67 0.875804
Target:  5'- uUGGGCUGCuucugguUCGCGCGgUUGAACg-- -3'
miRNA:   3'- gGCUUGACG-------AGCGUGCaAACUUGguu -5'
26659 5' -50 NC_005808.1 + 21371 0.67 0.858788
Target:  5'- cCCGAAgUGCUCGaCAaGUUcgacgccgaccgcUGGGCCGAc -3'
miRNA:   3'- -GGCUUgACGAGC-GUgCAA-------------ACUUGGUU- -5'
26659 5' -50 NC_005808.1 + 23251 0.67 0.850778
Target:  5'- gCCGAccuGCUGCugUCGCACcagcaggGGGCCGAa -3'
miRNA:   3'- -GGCU---UGACG--AGCGUGcaaa---CUUGGUU- -5'
26659 5' -50 NC_005808.1 + 37608 0.68 0.832241
Target:  5'- gCCGAccuGCUGUUCGCcaACGUcaugGAACUGAc -3'
miRNA:   3'- -GGCU---UGACGAGCG--UGCAaa--CUUGGUU- -5'
26659 5' -50 NC_005808.1 + 2413 0.68 0.83224
Target:  5'- gCCGAAUUGCggCGCACGc--GcGCCAc -3'
miRNA:   3'- -GGCUUGACGa-GCGUGCaaaCuUGGUu -5'
26659 5' -50 NC_005808.1 + 32742 0.68 0.812754
Target:  5'- gCGAACUGCUCGggcuuCACGUcgGGcagcuucgcggcGCCGAa -3'
miRNA:   3'- gGCUUGACGAGC-----GUGCAaaCU------------UGGUU- -5'
26659 5' -50 NC_005808.1 + 11067 0.69 0.749579
Target:  5'- aCGAACUGCUCGaACGUguccGggUCGc -3'
miRNA:   3'- gGCUUGACGAGCgUGCAaa--CuuGGUu -5'
26659 5' -50 NC_005808.1 + 35660 0.69 0.748477
Target:  5'- gCGAGCgggucgGCUCGCgugauggGCGUUUGuGCCGc -3'
miRNA:   3'- gGCUUGa-----CGAGCG-------UGCAAACuUGGUu -5'
26659 5' -50 NC_005808.1 + 39918 0.73 0.542345
Target:  5'- cCCGGcGCUGCUCGgGCGUgccGACCAc -3'
miRNA:   3'- -GGCU-UGACGAGCgUGCAaacUUGGUu -5'
26659 5' -50 NC_005808.1 + 35605 0.75 0.413686
Target:  5'- gCCGAcCcGCUCGCGCGUgUGAaaGCCAu -3'
miRNA:   3'- -GGCUuGaCGAGCGUGCAaACU--UGGUu -5'
26659 5' -50 NC_005808.1 + 11191 1.09 0.002649
Target:  5'- gCCGAACUGCUCGCACGUUUGAACCAAu -3'
miRNA:   3'- -GGCUUGACGAGCGUGCAAACUUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.