miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2666 5' -53 NC_001491.2 + 75331 0.66 0.973348
Target:  5'- gAGGAGCGGCGcagGUaGCcuguCGCAucuuggggAGCGg -3'
miRNA:   3'- gUUCUCGCCGCua-UA-CGu---GCGU--------UCGC- -5'
2666 5' -53 NC_001491.2 + 2396 0.66 0.973348
Target:  5'- -cGGGGuCGGgGAUcugGUGCAUcCAGGCGg -3'
miRNA:   3'- guUCUC-GCCgCUA---UACGUGcGUUCGC- -5'
2666 5' -53 NC_001491.2 + 3625 0.66 0.972509
Target:  5'- gGAGGGCcucgaagacggccuGGCaGGccaGCACGCAGGCGu -3'
miRNA:   3'- gUUCUCG--------------CCG-CUauaCGUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 39355 0.66 0.96865
Target:  5'- --uGAGCGGCccaugcggccuaGAUGcagccugcgggaguuUGCGCGCAGGUu -3'
miRNA:   3'- guuCUCGCCG------------CUAU---------------ACGUGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 34373 0.66 0.964079
Target:  5'- gCAAGAGCGGCaagcgGCGCucCGAGCc -3'
miRNA:   3'- -GUUCUCGCCGcuauaCGUGc-GUUCGc -5'
2666 5' -53 NC_001491.2 + 26698 0.66 0.960542
Target:  5'- gGAGcuuGCGGCcgcggGCGCGCAGGUa -3'
miRNA:   3'- gUUCu--CGCCGcuauaCGUGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 12486 0.66 0.956771
Target:  5'- --cGGGCGGCGGgc-GCcCGCGGGUc -3'
miRNA:   3'- guuCUCGCCGCUauaCGuGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 139876 0.67 0.948509
Target:  5'- gGAGAGCucGGagGGUGUGUACGCuauAAGCu -3'
miRNA:   3'- gUUCUCG--CCg-CUAUACGUGCG---UUCGc -5'
2666 5' -53 NC_001491.2 + 4935 0.67 0.948509
Target:  5'- aCGGGGuuuucGCGGCGuucugcgaGUGC-CGCGGGCGa -3'
miRNA:   3'- -GUUCU-----CGCCGCua------UACGuGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 29946 0.67 0.948509
Target:  5'- gCAuGGGgGGgGGUGUGgACGUggGUGg -3'
miRNA:   3'- -GUuCUCgCCgCUAUACgUGCGuuCGC- -5'
2666 5' -53 NC_001491.2 + 32634 0.67 0.94401
Target:  5'- gCGGGAGCGuCGAa----GCGCAAGCGg -3'
miRNA:   3'- -GUUCUCGCcGCUauacgUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 74112 0.68 0.929012
Target:  5'- cCGAGuAGUGGCcaauUAUGUGCGCA-GCGa -3'
miRNA:   3'- -GUUC-UCGCCGcu--AUACGUGCGUuCGC- -5'
2666 5' -53 NC_001491.2 + 64789 0.68 0.929012
Target:  5'- uGAGAGuCGGaCGcGUGUGCccCGCGGGCa -3'
miRNA:   3'- gUUCUC-GCC-GC-UAUACGu-GCGUUCGc -5'
2666 5' -53 NC_001491.2 + 101817 0.68 0.929012
Target:  5'- --uGAGCGGCGGcAUGCcccACGCAucAGUc -3'
miRNA:   3'- guuCUCGCCGCUaUACG---UGCGU--UCGc -5'
2666 5' -53 NC_001491.2 + 25149 0.68 0.917748
Target:  5'- ---cAGCGGCGAggagGCGCcgagagGCGAGCGu -3'
miRNA:   3'- guucUCGCCGCUaua-CGUG------CGUUCGC- -5'
2666 5' -53 NC_001491.2 + 138013 0.68 0.911737
Target:  5'- uGAGuGUGGUGAgagAUGgagaGCGCGAGCa -3'
miRNA:   3'- gUUCuCGCCGCUa--UACg---UGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 81737 0.68 0.905475
Target:  5'- -cGGAGCGGcCGGUGgcCACGCGcAGCa -3'
miRNA:   3'- guUCUCGCC-GCUAUacGUGCGU-UCGc -5'
2666 5' -53 NC_001491.2 + 79782 0.68 0.905475
Target:  5'- --cGAGCGGCGGgaaaGCACacgGCAgaGGCGa -3'
miRNA:   3'- guuCUCGCCGCUaua-CGUG---CGU--UCGC- -5'
2666 5' -53 NC_001491.2 + 67812 0.68 0.903548
Target:  5'- -cAGGGCGGCGGcUAUcauuuuguugggcaGCACGCGcuguauuauAGCGg -3'
miRNA:   3'- guUCUCGCCGCU-AUA--------------CGUGCGU---------UCGC- -5'
2666 5' -53 NC_001491.2 + 135404 0.69 0.892209
Target:  5'- aAAGAGCGGgGucgccggGUGCGCGUccGAGUa -3'
miRNA:   3'- gUUCUCGCCgCua-----UACGUGCG--UUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.