miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2666 5' -53 NC_001491.2 + 84370 1.08 0.005744
Target:  5'- gCAAGAGCGGCGAUAUGCACGCAAGCGc -3'
miRNA:   3'- -GUUCUCGCCGCUAUACGUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 85585 0.75 0.589671
Target:  5'- aCAGGAGCGGCGAga-GCaaagGCGCAAGa- -3'
miRNA:   3'- -GUUCUCGCCGCUauaCG----UGCGUUCgc -5'
2666 5' -53 NC_001491.2 + 12546 0.74 0.652789
Target:  5'- --cGAGCgGGCGcgGgaGCGCGCGAGCGc -3'
miRNA:   3'- guuCUCG-CCGCuaUa-CGUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 137739 0.72 0.755528
Target:  5'- gCAAGA-CGGCGcgGUAUGcCugGCAGGCa -3'
miRNA:   3'- -GUUCUcGCCGC--UAUAC-GugCGUUCGc -5'
2666 5' -53 NC_001491.2 + 12177 0.72 0.755528
Target:  5'- ---cGGCGGCGAgcgaGCGCGCA-GCGg -3'
miRNA:   3'- guucUCGCCGCUaua-CGUGCGUuCGC- -5'
2666 5' -53 NC_001491.2 + 119878 0.72 0.761425
Target:  5'- aGAGAGCGGCGuaAUGUGgACGCuguuugacgacacAGCGu -3'
miRNA:   3'- gUUCUCGCCGC--UAUACgUGCGu------------UCGC- -5'
2666 5' -53 NC_001491.2 + 147184 0.72 0.765332
Target:  5'- -cAGGGCGGCGA---GCGacgGCGAGCGa -3'
miRNA:   3'- guUCUCGCCGCUauaCGUg--CGUUCGC- -5'
2666 5' -53 NC_001491.2 + 24653 0.7 0.829906
Target:  5'- -cGGAGgGGgGggAUGCGCGCcccgAGGCGg -3'
miRNA:   3'- guUCUCgCCgCuaUACGUGCG----UUCGC- -5'
2666 5' -53 NC_001491.2 + 15246 0.7 0.846774
Target:  5'- --cGGGUGGCGggGUcuuaaCGCGCAAGCGu -3'
miRNA:   3'- guuCUCGCCGCuaUAc----GUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 75479 0.7 0.862816
Target:  5'- gAAGcGCGGgGGUguaacuGUGCAUGUAAGCa -3'
miRNA:   3'- gUUCuCGCCgCUA------UACGUGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 135404 0.69 0.892209
Target:  5'- aAAGAGCGGgGucgccggGUGCGCGUccGAGUa -3'
miRNA:   3'- gUUCUCGCCgCua-----UACGUGCG--UUCGc -5'
2666 5' -53 NC_001491.2 + 67812 0.68 0.903548
Target:  5'- -cAGGGCGGCGGcUAUcauuuuguugggcaGCACGCGcuguauuauAGCGg -3'
miRNA:   3'- guUCUCGCCGCU-AUA--------------CGUGCGU---------UCGC- -5'
2666 5' -53 NC_001491.2 + 79782 0.68 0.905475
Target:  5'- --cGAGCGGCGGgaaaGCACacgGCAgaGGCGa -3'
miRNA:   3'- guuCUCGCCGCUaua-CGUG---CGU--UCGC- -5'
2666 5' -53 NC_001491.2 + 81737 0.68 0.905475
Target:  5'- -cGGAGCGGcCGGUGgcCACGCGcAGCa -3'
miRNA:   3'- guUCUCGCC-GCUAUacGUGCGU-UCGc -5'
2666 5' -53 NC_001491.2 + 138013 0.68 0.911737
Target:  5'- uGAGuGUGGUGAgagAUGgagaGCGCGAGCa -3'
miRNA:   3'- gUUCuCGCCGCUa--UACg---UGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 25149 0.68 0.917748
Target:  5'- ---cAGCGGCGAggagGCGCcgagagGCGAGCGu -3'
miRNA:   3'- guucUCGCCGCUaua-CGUG------CGUUCGC- -5'
2666 5' -53 NC_001491.2 + 74112 0.68 0.929012
Target:  5'- cCGAGuAGUGGCcaauUAUGUGCGCA-GCGa -3'
miRNA:   3'- -GUUC-UCGCCGcu--AUACGUGCGUuCGC- -5'
2666 5' -53 NC_001491.2 + 64789 0.68 0.929012
Target:  5'- uGAGAGuCGGaCGcGUGUGCccCGCGGGCa -3'
miRNA:   3'- gUUCUC-GCC-GC-UAUACGu-GCGUUCGc -5'
2666 5' -53 NC_001491.2 + 101817 0.68 0.929012
Target:  5'- --uGAGCGGCGGcAUGCcccACGCAucAGUc -3'
miRNA:   3'- guuCUCGCCGCUaUACG---UGCGU--UCGc -5'
2666 5' -53 NC_001491.2 + 32634 0.67 0.94401
Target:  5'- gCGGGAGCGuCGAa----GCGCAAGCGg -3'
miRNA:   3'- -GUUCUCGCcGCUauacgUGCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.