miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2666 5' -53 NC_001491.2 + 139876 0.67 0.948509
Target:  5'- gGAGAGCucGGagGGUGUGUACGCuauAAGCu -3'
miRNA:   3'- gUUCUCG--CCg-CUAUACGUGCG---UUCGc -5'
2666 5' -53 NC_001491.2 + 4935 0.67 0.948509
Target:  5'- aCGGGGuuuucGCGGCGuucugcgaGUGC-CGCGGGCGa -3'
miRNA:   3'- -GUUCU-----CGCCGCua------UACGuGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 29946 0.67 0.948509
Target:  5'- gCAuGGGgGGgGGUGUGgACGUggGUGg -3'
miRNA:   3'- -GUuCUCgCCgCUAUACgUGCGuuCGC- -5'
2666 5' -53 NC_001491.2 + 12486 0.66 0.956771
Target:  5'- --cGGGCGGCGGgc-GCcCGCGGGUc -3'
miRNA:   3'- guuCUCGCCGCUauaCGuGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 26698 0.66 0.960542
Target:  5'- gGAGcuuGCGGCcgcggGCGCGCAGGUa -3'
miRNA:   3'- gUUCu--CGCCGcuauaCGUGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 34373 0.66 0.964079
Target:  5'- gCAAGAGCGGCaagcgGCGCucCGAGCc -3'
miRNA:   3'- -GUUCUCGCCGcuauaCGUGc-GUUCGc -5'
2666 5' -53 NC_001491.2 + 39355 0.66 0.96865
Target:  5'- --uGAGCGGCccaugcggccuaGAUGcagccugcgggaguuUGCGCGCAGGUu -3'
miRNA:   3'- guuCUCGCCG------------CUAU---------------ACGUGCGUUCGc -5'
2666 5' -53 NC_001491.2 + 3625 0.66 0.972509
Target:  5'- gGAGGGCcucgaagacggccuGGCaGGccaGCACGCAGGCGu -3'
miRNA:   3'- gUUCUCG--------------CCG-CUauaCGUGCGUUCGC- -5'
2666 5' -53 NC_001491.2 + 2396 0.66 0.973348
Target:  5'- -cGGGGuCGGgGAUcugGUGCAUcCAGGCGg -3'
miRNA:   3'- guUCUC-GCCgCUA---UACGUGcGUUCGC- -5'
2666 5' -53 NC_001491.2 + 75331 0.66 0.973348
Target:  5'- gAGGAGCGGCGcagGUaGCcuguCGCAucuuggggAGCGg -3'
miRNA:   3'- gUUCUCGCCGCua-UA-CGu---GCGU--------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.