miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 3' -62.8 NC_005808.1 + 17498 0.66 0.26628
Target:  5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3'
miRNA:   3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 16057 0.66 0.253888
Target:  5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3'
miRNA:   3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 32736 0.66 0.287542
Target:  5'- uGCUC---GGGCUUCACGUCGG-GCAg -3'
miRNA:   3'- gCGAGcguCCCGGAGUGCGGUCgCGU- -5'
26660 3' -62.8 NC_005808.1 + 12752 0.66 0.266945
Target:  5'- gGCUaucaagGC-GGGCCUCgacacGCGCC-GCGCAu -3'
miRNA:   3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 39834 0.66 0.26035
Target:  5'- uGCUCGC--GGCCaCGCGCagCGGCGCc -3'
miRNA:   3'- gCGAGCGucCCGGaGUGCG--GUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 15955 0.66 0.259698
Target:  5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3'
miRNA:   3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 2463 0.66 0.253888
Target:  5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3'
miRNA:   3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 34138 0.66 0.280541
Target:  5'- gGCaUCGCAGGccaCCUCgACGCCGacaucGCGCc -3'
miRNA:   3'- gCG-AGCGUCCc--GGAG-UGCGGU-----CGCGu -5'
26660 3' -62.8 NC_005808.1 + 35615 0.66 0.253888
Target:  5'- aGCaggCGCAuGGCCUCggGCGgCAGCGUc -3'
miRNA:   3'- gCGa--GCGUcCCGGAG--UGCgGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 16425 0.66 0.280541
Target:  5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3'
miRNA:   3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 19303 0.67 0.247558
Target:  5'- aGUUCau-GGGCCUgACGCC-GCGCu -3'
miRNA:   3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5'
26660 3' -62.8 NC_005808.1 + 28648 0.67 0.246932
Target:  5'- cCGCgCGCAGuGCCagaUCGgugccggcggccuCGCCAGCGCGg -3'
miRNA:   3'- -GCGaGCGUCcCGG---AGU-------------GCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 6730 0.67 0.223538
Target:  5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3'
miRNA:   3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5'
26660 3' -62.8 NC_005808.1 + 31722 0.67 0.21785
Target:  5'- cCGCcgCGCGcGGGCUuuuUCACGCCuaaaaauauGCGCu -3'
miRNA:   3'- -GCGa-GCGU-CCCGG---AGUGCGGu--------CGCGu -5'
26660 3' -62.8 NC_005808.1 + 12549 0.67 0.21785
Target:  5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3'
miRNA:   3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 27518 0.67 0.22935
Target:  5'- gCGCUgGCauaccagcgccAGGGCCUgCGgcCGCCgGGCGCGg -3'
miRNA:   3'- -GCGAgCG-----------UCCCGGA-GU--GCGG-UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 9949 0.67 0.247558
Target:  5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3'
miRNA:   3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 7859 0.67 0.247558
Target:  5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3'
miRNA:   3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 37851 0.67 0.247558
Target:  5'- aGCUUGUAGaGGUCg-GgGCCGGCGCc -3'
miRNA:   3'- gCGAGCGUC-CCGGagUgCGGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 18049 0.68 0.206847
Target:  5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3'
miRNA:   3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.