miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 3' -62.8 NC_005808.1 + 11588 1.08 0.000141
Target:  5'- cCGCUCGCAGGGCCUCACGCCAGCGCAg -3'
miRNA:   3'- -GCGAGCGUCCCGGAGUGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 10932 0.78 0.033985
Target:  5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3'
miRNA:   3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5'
26660 3' -62.8 NC_005808.1 + 20815 0.74 0.071333
Target:  5'- gCGCggCGCAGcGCCUCuacgGCGCCAGCaGCAu -3'
miRNA:   3'- -GCGa-GCGUCcCGGAG----UGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 31304 0.74 0.073372
Target:  5'- gGCUCGUAgcuGGGCCgCGCGCCGGgGUu -3'
miRNA:   3'- gCGAGCGU---CCCGGaGUGCGGUCgCGu -5'
26660 3' -62.8 NC_005808.1 + 8376 0.72 0.09441
Target:  5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3'
miRNA:   3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 30437 0.72 0.097074
Target:  5'- gCGCggGCAGGGCCUCGCccugaaucaguuGCCagggGGCGCc -3'
miRNA:   3'- -GCGagCGUCCCGGAGUG------------CGG----UCGCGu -5'
26660 3' -62.8 NC_005808.1 + 34240 0.71 0.114602
Target:  5'- aGUUCGCgGGGGCgUCGCGgaacaUCGGCGCGa -3'
miRNA:   3'- gCGAGCG-UCCCGgAGUGC-----GGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 34385 0.71 0.117797
Target:  5'- gGCUUcCAGGGCCaCGCuGCCGGgGCAg -3'
miRNA:   3'- gCGAGcGUCCCGGaGUG-CGGUCgCGU- -5'
26660 3' -62.8 NC_005808.1 + 37288 0.71 0.127886
Target:  5'- uGCUCGCGGccuacGGCCUCGaccUGCCAGacauGCAg -3'
miRNA:   3'- gCGAGCGUC-----CCGGAGU---GCGGUCg---CGU- -5'
26660 3' -62.8 NC_005808.1 + 30362 0.7 0.145309
Target:  5'- gGCUCGCAGGGgCgcuacccgacguuuUCcggcgacucgcGCGaCCAGCGCAg -3'
miRNA:   3'- gCGAGCGUCCCgG--------------AG-----------UGC-GGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 15795 0.7 0.150497
Target:  5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3'
miRNA:   3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5'
26660 3' -62.8 NC_005808.1 + 27445 0.69 0.154603
Target:  5'- gGC-CGCAGGcCCUggcgcuggUAUGCCAGCGCGc -3'
miRNA:   3'- gCGaGCGUCCcGGA--------GUGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 19557 0.69 0.158809
Target:  5'- gGUUCGCAGcGGCCUgcccaccggCAC-CUGGCGCAa -3'
miRNA:   3'- gCGAGCGUC-CCGGA---------GUGcGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 8171 0.69 0.163119
Target:  5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3'
miRNA:   3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5'
26660 3' -62.8 NC_005808.1 + 31660 0.69 0.167533
Target:  5'- cCGCUUGguGGGCCUaCACcgGCCAcaaGCAc -3'
miRNA:   3'- -GCGAGCguCCCGGA-GUG--CGGUcg-CGU- -5'
26660 3' -62.8 NC_005808.1 + 3715 0.69 0.172055
Target:  5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3'
miRNA:   3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5'
26660 3' -62.8 NC_005808.1 + 26728 0.68 0.191245
Target:  5'- uGCaaaGCcGGGCCaC-CGCCAGCGCGc -3'
miRNA:   3'- gCGag-CGuCCCGGaGuGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 18075 0.68 0.191245
Target:  5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3'
miRNA:   3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 6231 0.68 0.191245
Target:  5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3'
miRNA:   3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 25926 0.68 0.196327
Target:  5'- aGCUUGCGGuGGCCcagCAUGuCCcGCGCu -3'
miRNA:   3'- gCGAGCGUC-CCGGa--GUGC-GGuCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.