miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 3' -62.8 NC_005808.1 + 2463 0.66 0.253888
Target:  5'- aCGCUUGCcgcccugacaAGGGUacgCACGCgGGCGUc -3'
miRNA:   3'- -GCGAGCG----------UCCCGga-GUGCGgUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 3715 0.69 0.172055
Target:  5'- gCGCUCGUGGcGCCcgugccguUCACGCCGGUGg- -3'
miRNA:   3'- -GCGAGCGUCcCGG--------AGUGCGGUCGCgu -5'
26660 3' -62.8 NC_005808.1 + 6231 0.68 0.191245
Target:  5'- uGCcuUCGgcCAGGGCCUgCACGCCgguaacGGUGCGg -3'
miRNA:   3'- gCG--AGC--GUCCCGGA-GUGCGG------UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 6730 0.67 0.223538
Target:  5'- cCGCUgCGCuGGGCCgcCGCGCUcaauAGCGgAa -3'
miRNA:   3'- -GCGA-GCGuCCCGGa-GUGCGG----UCGCgU- -5'
26660 3' -62.8 NC_005808.1 + 7859 0.67 0.247558
Target:  5'- gCGCcUGCuGGGCggCgaaggguggACGCCGGCGCAg -3'
miRNA:   3'- -GCGaGCGuCCCGgaG---------UGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 8171 0.69 0.163119
Target:  5'- cCGCgcggUGCAGGGCCUCaaACGCUuuuGgGCc -3'
miRNA:   3'- -GCGa---GCGUCCCGGAG--UGCGGu--CgCGu -5'
26660 3' -62.8 NC_005808.1 + 8376 0.72 0.09441
Target:  5'- gGCUCGaacccGGCCUCGCGCUGGCuGCGu -3'
miRNA:   3'- gCGAGCguc--CCGGAGUGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 9949 0.67 0.247558
Target:  5'- uCGCcacgCGCcuGGCCgagaagcagCGCGCCGGUGCc -3'
miRNA:   3'- -GCGa---GCGucCCGGa--------GUGCGGUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 10932 0.78 0.033985
Target:  5'- gGUUUGCAGGGCCUCGgGCaguuGCGCGg -3'
miRNA:   3'- gCGAGCGUCCCGGAGUgCGgu--CGCGU- -5'
26660 3' -62.8 NC_005808.1 + 11588 1.08 0.000141
Target:  5'- cCGCUCGCAGGGCCUCACGCCAGCGCAg -3'
miRNA:   3'- -GCGAGCGUCCCGGAGUGCGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 12549 0.67 0.21785
Target:  5'- gGCgUCGguGaauuucuugccGGCCUCGCGCU-GCGCGg -3'
miRNA:   3'- gCG-AGCguC-----------CCGGAGUGCGGuCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 12752 0.66 0.266945
Target:  5'- gGCUaucaagGC-GGGCCUCgacacGCGCC-GCGCAu -3'
miRNA:   3'- gCGAg-----CGuCCCGGAG-----UGCGGuCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 15795 0.7 0.150497
Target:  5'- uGUcgagCGCAuGGCCUCGCGCCAGUuCGa -3'
miRNA:   3'- gCGa---GCGUcCCGGAGUGCGGUCGcGU- -5'
26660 3' -62.8 NC_005808.1 + 15955 0.66 0.259698
Target:  5'- aGCU-GCuGGGCCUCACcuacguGCCcgagcaacagaucGGCGCGu -3'
miRNA:   3'- gCGAgCGuCCCGGAGUG------CGG-------------UCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 16057 0.66 0.253888
Target:  5'- aGUUCGCGcacGuGGCCgcCGCGCgCGGCGCc -3'
miRNA:   3'- gCGAGCGU---C-CCGGa-GUGCG-GUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 16425 0.66 0.280541
Target:  5'- gGC-CGCGGGGUaau-CGCCGGCgGCGu -3'
miRNA:   3'- gCGaGCGUCCCGgaguGCGGUCG-CGU- -5'
26660 3' -62.8 NC_005808.1 + 17498 0.66 0.26628
Target:  5'- uGCUgGCGGGGCCacugcUCaagggcgACGUgGGCGCc -3'
miRNA:   3'- gCGAgCGUCCCGG-----AG-------UGCGgUCGCGu -5'
26660 3' -62.8 NC_005808.1 + 18049 0.68 0.206847
Target:  5'- uGCUUG-GGGGCCUUA--CCGGCGCGg -3'
miRNA:   3'- gCGAGCgUCCCGGAGUgcGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 18075 0.68 0.191245
Target:  5'- uGCgUGCuGGGCCgccgaaGCCGGCGCGa -3'
miRNA:   3'- gCGaGCGuCCCGGagug--CGGUCGCGU- -5'
26660 3' -62.8 NC_005808.1 + 19303 0.67 0.247558
Target:  5'- aGUUCau-GGGCCUgACGCC-GCGCu -3'
miRNA:   3'- gCGAGcguCCCGGAgUGCGGuCGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.