miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26660 5' -56.3 NC_005808.1 + 15649 0.66 0.565785
Target:  5'- --cGCGGUGcaucCGCAGcGCGucgucacugacggcGCCAUUGAc -3'
miRNA:   3'- aaaCGCCACa---GCGUC-CGC--------------UGGUAGCU- -5'
26660 5' -56.3 NC_005808.1 + 17433 0.66 0.525274
Target:  5'- -aUGCaGGcauaccUGUCGCAGGCGAUgGUgucCGAu -3'
miRNA:   3'- aaACG-CC------ACAGCGUCCGCUGgUA---GCU- -5'
26660 5' -56.3 NC_005808.1 + 22049 0.66 0.580222
Target:  5'- gUUGCGGUcGUCGCgcuugcucGGGUcGCgGUCGGc -3'
miRNA:   3'- aAACGCCA-CAGCG--------UCCGcUGgUAGCU- -5'
26660 5' -56.3 NC_005808.1 + 20616 0.66 0.55805
Target:  5'- --gGCGGcGUCGCAGGUcGgUGUCGGc -3'
miRNA:   3'- aaaCGCCaCAGCGUCCGcUgGUAGCU- -5'
26660 5' -56.3 NC_005808.1 + 11509 0.67 0.4922
Target:  5'- -cUGcCGGUGUCGCGccuuaucGGCGACCugcacgcCGGc -3'
miRNA:   3'- aaAC-GCCACAGCGU-------CCGCUGGua-----GCU- -5'
26660 5' -56.3 NC_005808.1 + 6362 0.67 0.493253
Target:  5'- -cUGCcGUcaauGUCGUGGGCGACCuguUCGGc -3'
miRNA:   3'- aaACGcCA----CAGCGUCCGCUGGu--AGCU- -5'
26660 5' -56.3 NC_005808.1 + 30696 0.67 0.514507
Target:  5'- aUUGuCGGUGUUGU-GGCGGgcauggcuuucuCCAUCGGa -3'
miRNA:   3'- aAAC-GCCACAGCGuCCGCU------------GGUAGCU- -5'
26660 5' -56.3 NC_005808.1 + 37244 0.67 0.503831
Target:  5'- --cGCGGU---GCAGGCGGCCAcgcagcgCGAu -3'
miRNA:   3'- aaaCGCCAcagCGUCCGCUGGUa------GCU- -5'
26660 5' -56.3 NC_005808.1 + 24432 0.68 0.44201
Target:  5'- aUUUGuCGGUGcCGCGcGCGGCC-UCGGc -3'
miRNA:   3'- -AAAC-GCCACaGCGUcCGCUGGuAGCU- -5'
26660 5' -56.3 NC_005808.1 + 180 0.68 0.44201
Target:  5'- ---cCGGUGUCGCuGGGC-ACCGUCa- -3'
miRNA:   3'- aaacGCCACAGCG-UCCGcUGGUAGcu -5'
26660 5' -56.3 NC_005808.1 + 14487 0.69 0.403261
Target:  5'- ---aCGGUGcCGCAGGCGcGCCuggCGAc -3'
miRNA:   3'- aaacGCCACaGCGUCCGC-UGGua-GCU- -5'
26660 5' -56.3 NC_005808.1 + 667 0.69 0.393915
Target:  5'- -cUGCuGGccgaccCGCAGGCGGCCAUCa- -3'
miRNA:   3'- aaACG-CCaca---GCGUCCGCUGGUAGcu -5'
26660 5' -56.3 NC_005808.1 + 20301 0.69 0.366733
Target:  5'- --aGCGG-GUUGCucGGCGGCCGguugCGAu -3'
miRNA:   3'- aaaCGCCaCAGCGu-CCGCUGGUa---GCU- -5'
26660 5' -56.3 NC_005808.1 + 34134 0.69 0.38471
Target:  5'- -cUGCGGcaUCGCAGGCcACC-UCGAc -3'
miRNA:   3'- aaACGCCacAGCGUCCGcUGGuAGCU- -5'
26660 5' -56.3 NC_005808.1 + 37526 0.74 0.196992
Target:  5'- -cUGCaacGUGccgCGCAGGCGGCCGUCGc -3'
miRNA:   3'- aaACGc--CACa--GCGUCCGCUGGUAGCu -5'
26660 5' -56.3 NC_005808.1 + 11552 1.06 0.000768
Target:  5'- cUUUGCGGUGUCGCAGGCGACCAUCGAa -3'
miRNA:   3'- -AAACGCCACAGCGUCCGCUGGUAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.