Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26660 | 5' | -56.3 | NC_005808.1 | + | 15649 | 0.66 | 0.565785 |
Target: 5'- --cGCGGUGcaucCGCAGcGCGucgucacugacggcGCCAUUGAc -3' miRNA: 3'- aaaCGCCACa---GCGUC-CGC--------------UGGUAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 17433 | 0.66 | 0.525274 |
Target: 5'- -aUGCaGGcauaccUGUCGCAGGCGAUgGUgucCGAu -3' miRNA: 3'- aaACG-CC------ACAGCGUCCGCUGgUA---GCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 22049 | 0.66 | 0.580222 |
Target: 5'- gUUGCGGUcGUCGCgcuugcucGGGUcGCgGUCGGc -3' miRNA: 3'- aAACGCCA-CAGCG--------UCCGcUGgUAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 20616 | 0.66 | 0.55805 |
Target: 5'- --gGCGGcGUCGCAGGUcGgUGUCGGc -3' miRNA: 3'- aaaCGCCaCAGCGUCCGcUgGUAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 11509 | 0.67 | 0.4922 |
Target: 5'- -cUGcCGGUGUCGCGccuuaucGGCGACCugcacgcCGGc -3' miRNA: 3'- aaAC-GCCACAGCGU-------CCGCUGGua-----GCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 6362 | 0.67 | 0.493253 |
Target: 5'- -cUGCcGUcaauGUCGUGGGCGACCuguUCGGc -3' miRNA: 3'- aaACGcCA----CAGCGUCCGCUGGu--AGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 30696 | 0.67 | 0.514507 |
Target: 5'- aUUGuCGGUGUUGU-GGCGGgcauggcuuucuCCAUCGGa -3' miRNA: 3'- aAAC-GCCACAGCGuCCGCU------------GGUAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 37244 | 0.67 | 0.503831 |
Target: 5'- --cGCGGU---GCAGGCGGCCAcgcagcgCGAu -3' miRNA: 3'- aaaCGCCAcagCGUCCGCUGGUa------GCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 24432 | 0.68 | 0.44201 |
Target: 5'- aUUUGuCGGUGcCGCGcGCGGCC-UCGGc -3' miRNA: 3'- -AAAC-GCCACaGCGUcCGCUGGuAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 180 | 0.68 | 0.44201 |
Target: 5'- ---cCGGUGUCGCuGGGC-ACCGUCa- -3' miRNA: 3'- aaacGCCACAGCG-UCCGcUGGUAGcu -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 14487 | 0.69 | 0.403261 |
Target: 5'- ---aCGGUGcCGCAGGCGcGCCuggCGAc -3' miRNA: 3'- aaacGCCACaGCGUCCGC-UGGua-GCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 667 | 0.69 | 0.393915 |
Target: 5'- -cUGCuGGccgaccCGCAGGCGGCCAUCa- -3' miRNA: 3'- aaACG-CCaca---GCGUCCGCUGGUAGcu -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 20301 | 0.69 | 0.366733 |
Target: 5'- --aGCGG-GUUGCucGGCGGCCGguugCGAu -3' miRNA: 3'- aaaCGCCaCAGCGu-CCGCUGGUa---GCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 34134 | 0.69 | 0.38471 |
Target: 5'- -cUGCGGcaUCGCAGGCcACC-UCGAc -3' miRNA: 3'- aaACGCCacAGCGUCCGcUGGuAGCU- -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 37526 | 0.74 | 0.196992 |
Target: 5'- -cUGCaacGUGccgCGCAGGCGGCCGUCGc -3' miRNA: 3'- aaACGc--CACa--GCGUCCGCUGGUAGCu -5' |
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26660 | 5' | -56.3 | NC_005808.1 | + | 11552 | 1.06 | 0.000768 |
Target: 5'- cUUUGCGGUGUCGCAGGCGACCAUCGAa -3' miRNA: 3'- -AAACGCCACAGCGUCCGCUGGUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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