miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26663 5' -54.4 NC_005808.1 + 22611 0.66 0.671021
Target:  5'- aAGAAGCGCC-CcGcGCGCGGCagcaGGUa -3'
miRNA:   3'- cUUUUUGCGGuGaCaCGCGCCGa---CCA- -5'
26663 5' -54.4 NC_005808.1 + 13332 0.66 0.659638
Target:  5'- uGAAAGACGCCAaggaUG-GCaacUGGCUGGc -3'
miRNA:   3'- -CUUUUUGCGGUg---ACaCGc--GCCGACCa -5'
26663 5' -54.4 NC_005808.1 + 30699 0.66 0.648228
Target:  5'- ----uGCGCC-CUcauUGCGcCGGCUGGUc -3'
miRNA:   3'- cuuuuUGCGGuGAc--ACGC-GCCGACCA- -5'
26663 5' -54.4 NC_005808.1 + 1362 0.66 0.648228
Target:  5'- -----uCGCC-CUGgGCGCGGC-GGUg -3'
miRNA:   3'- cuuuuuGCGGuGACaCGCGCCGaCCA- -5'
26663 5' -54.4 NC_005808.1 + 4185 0.66 0.648228
Target:  5'- cGGGAAGCaaCGCUGcaGCGCaGGCUGGc -3'
miRNA:   3'- -CUUUUUGcgGUGACa-CGCG-CCGACCa -5'
26663 5' -54.4 NC_005808.1 + 9575 0.67 0.613946
Target:  5'- ---uGAUGCCACUGUuCGCcacggcggaacaGGCUGGc -3'
miRNA:   3'- cuuuUUGCGGUGACAcGCG------------CCGACCa -5'
26663 5' -54.4 NC_005808.1 + 25783 0.67 0.602538
Target:  5'- --cGAugGCCGCgaUGcGCGCGGCgcgcucGGUa -3'
miRNA:   3'- cuuUUugCGGUG--ACaCGCGCCGa-----CCA- -5'
26663 5' -54.4 NC_005808.1 + 42420 0.67 0.579815
Target:  5'- gGGAuGACGCCGgcauuCUGcGCGCGGCagcuUGGg -3'
miRNA:   3'- -CUUuUUGCGGU-----GACaCGCGCCG----ACCa -5'
26663 5' -54.4 NC_005808.1 + 35214 0.67 0.568519
Target:  5'- uGGAAGGuCGCCGCgGUGCccGCcGCUGGa -3'
miRNA:   3'- -CUUUUU-GCGGUGaCACG--CGcCGACCa -5'
26663 5' -54.4 NC_005808.1 + 39031 0.68 0.546103
Target:  5'- ----cGCGUCGCUGaaauuuaugcgGCGCGGUUGGc -3'
miRNA:   3'- cuuuuUGCGGUGACa----------CGCGCCGACCa -5'
26663 5' -54.4 NC_005808.1 + 13085 0.68 0.523977
Target:  5'- cGAGGccguCGCCACUGcgcUGCGCGGcCUGu- -3'
miRNA:   3'- -CUUUuu--GCGGUGAC---ACGCGCC-GACca -5'
26663 5' -54.4 NC_005808.1 + 22496 0.68 0.513043
Target:  5'- cGAGucCGCCGCcGUcaagGCGUGGCUGGc -3'
miRNA:   3'- cUUUuuGCGGUGaCA----CGCGCCGACCa -5'
26663 5' -54.4 NC_005808.1 + 13766 0.69 0.477665
Target:  5'- ---cAGCGCCGacaugagcgcaaucUUGUGCGCGuuGCUGGUc -3'
miRNA:   3'- cuuuUUGCGGU--------------GACACGCGC--CGACCA- -5'
26663 5' -54.4 NC_005808.1 + 39767 0.69 0.459916
Target:  5'- ---uGGCGCCGCUGcGCGUGGCcgcgagcaccUGGc -3'
miRNA:   3'- cuuuUUGCGGUGACaCGCGCCG----------ACCa -5'
26663 5' -54.4 NC_005808.1 + 24127 0.81 0.085814
Target:  5'- -----cCGCUACUGUGCGCGGCaUGGa -3'
miRNA:   3'- cuuuuuGCGGUGACACGCGCCG-ACCa -5'
26663 5' -54.4 NC_005808.1 + 12559 1.06 0.001122
Target:  5'- uGAAAAACGCCACUGUGCGCGGCUGGUu -3'
miRNA:   3'- -CUUUUUGCGGUGACACGCGCCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.