Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26663 | 5' | -54.4 | NC_005808.1 | + | 22611 | 0.66 | 0.671021 |
Target: 5'- aAGAAGCGCC-CcGcGCGCGGCagcaGGUa -3' miRNA: 3'- cUUUUUGCGGuGaCaCGCGCCGa---CCA- -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 13332 | 0.66 | 0.659638 |
Target: 5'- uGAAAGACGCCAaggaUG-GCaacUGGCUGGc -3' miRNA: 3'- -CUUUUUGCGGUg---ACaCGc--GCCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 30699 | 0.66 | 0.648228 |
Target: 5'- ----uGCGCC-CUcauUGCGcCGGCUGGUc -3' miRNA: 3'- cuuuuUGCGGuGAc--ACGC-GCCGACCA- -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 1362 | 0.66 | 0.648228 |
Target: 5'- -----uCGCC-CUGgGCGCGGC-GGUg -3' miRNA: 3'- cuuuuuGCGGuGACaCGCGCCGaCCA- -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 4185 | 0.66 | 0.648228 |
Target: 5'- cGGGAAGCaaCGCUGcaGCGCaGGCUGGc -3' miRNA: 3'- -CUUUUUGcgGUGACa-CGCG-CCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 9575 | 0.67 | 0.613946 |
Target: 5'- ---uGAUGCCACUGUuCGCcacggcggaacaGGCUGGc -3' miRNA: 3'- cuuuUUGCGGUGACAcGCG------------CCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 25783 | 0.67 | 0.602538 |
Target: 5'- --cGAugGCCGCgaUGcGCGCGGCgcgcucGGUa -3' miRNA: 3'- cuuUUugCGGUG--ACaCGCGCCGa-----CCA- -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 42420 | 0.67 | 0.579815 |
Target: 5'- gGGAuGACGCCGgcauuCUGcGCGCGGCagcuUGGg -3' miRNA: 3'- -CUUuUUGCGGU-----GACaCGCGCCG----ACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 35214 | 0.67 | 0.568519 |
Target: 5'- uGGAAGGuCGCCGCgGUGCccGCcGCUGGa -3' miRNA: 3'- -CUUUUU-GCGGUGaCACG--CGcCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 39031 | 0.68 | 0.546103 |
Target: 5'- ----cGCGUCGCUGaaauuuaugcgGCGCGGUUGGc -3' miRNA: 3'- cuuuuUGCGGUGACa----------CGCGCCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 13085 | 0.68 | 0.523977 |
Target: 5'- cGAGGccguCGCCACUGcgcUGCGCGGcCUGu- -3' miRNA: 3'- -CUUUuu--GCGGUGAC---ACGCGCC-GACca -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 22496 | 0.68 | 0.513043 |
Target: 5'- cGAGucCGCCGCcGUcaagGCGUGGCUGGc -3' miRNA: 3'- cUUUuuGCGGUGaCA----CGCGCCGACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 13766 | 0.69 | 0.477665 |
Target: 5'- ---cAGCGCCGacaugagcgcaaucUUGUGCGCGuuGCUGGUc -3' miRNA: 3'- cuuuUUGCGGU--------------GACACGCGC--CGACCA- -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 39767 | 0.69 | 0.459916 |
Target: 5'- ---uGGCGCCGCUGcGCGUGGCcgcgagcaccUGGc -3' miRNA: 3'- cuuuUUGCGGUGACaCGCGCCG----------ACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 24127 | 0.81 | 0.085814 |
Target: 5'- -----cCGCUACUGUGCGCGGCaUGGa -3' miRNA: 3'- cuuuuuGCGGUGACACGCGCCG-ACCa -5' |
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26663 | 5' | -54.4 | NC_005808.1 | + | 12559 | 1.06 | 0.001122 |
Target: 5'- uGAAAAACGCCACUGUGCGCGGCUGGUu -3' miRNA: 3'- -CUUUUUGCGGUGACACGCGCCGACCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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