miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26664 5' -55.3 NC_005808.1 + 12866 1.07 0.000765
Target:  5'- cUACGCACUUCGCACCAGCCUGUCUGAg -3'
miRNA:   3'- -AUGCGUGAAGCGUGGUCGGACAGACU- -5'
26664 5' -55.3 NC_005808.1 + 7829 0.7 0.380997
Target:  5'- gGCGCAgaUCGCGCCGGUgCUGcaaucgCUGAc -3'
miRNA:   3'- aUGCGUgaAGCGUGGUCG-GACa-----GACU- -5'
26664 5' -55.3 NC_005808.1 + 2501 0.68 0.448836
Target:  5'- gGCGCcgauCUUCGagGCCGGCCUG-CUGc -3'
miRNA:   3'- aUGCGu---GAAGCg-UGGUCGGACaGACu -5'
26664 5' -55.3 NC_005808.1 + 38816 0.66 0.58973
Target:  5'- aGCGCACUUUGCGcaccucgccgcCCAGCUUc-CUGAc -3'
miRNA:   3'- aUGCGUGAAGCGU-----------GGUCGGAcaGACU- -5'
26664 5' -55.3 NC_005808.1 + 29527 0.66 0.601065
Target:  5'- cGCGCGCUUCGuCGCCugguGCCaGgagcacCUGGg -3'
miRNA:   3'- aUGCGUGAAGC-GUGGu---CGGaCa-----GACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.