Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26665 | 3' | -60.1 | NC_005808.1 | + | 41218 | 0.74 | 0.110465 |
Target: 5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3' miRNA: 3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 28623 | 0.67 | 0.328465 |
Target: 5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3' miRNA: 3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 27667 | 0.67 | 0.349499 |
Target: 5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3' miRNA: 3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 39508 | 0.66 | 0.374938 |
Target: 5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3' miRNA: 3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 21986 | 0.66 | 0.383692 |
Target: 5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3' miRNA: 3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 27826 | 0.66 | 0.383692 |
Target: 5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3' miRNA: 3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 12683 | 0.66 | 0.39258 |
Target: 5'- ---gGCGCGUGUcGAGGCC---CGCCu -3' miRNA: 3'- cuaaCGCGCGCAcCUCCGGcucGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 32470 | 0.66 | 0.401601 |
Target: 5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3' miRNA: 3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 38768 | 0.66 | 0.401601 |
Target: 5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3' miRNA: 3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 18841 | 0.68 | 0.309893 |
Target: 5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3' miRNA: 3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 26239 | 0.68 | 0.287818 |
Target: 5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3' miRNA: 3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 13295 | 0.74 | 0.120073 |
Target: 5'- cGAUUGCaGCGCGccGGGGCCG-GCGUUg -3' miRNA: 3'- -CUAACG-CGCGCacCUCCGGCuCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 24116 | 0.73 | 0.132992 |
Target: 5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3' miRNA: 3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 4166 | 0.73 | 0.134093 |
Target: 5'- -cUUGCGCGcCGUGGucgAGGUguagccagUGGGCGCCg -3' miRNA: 3'- cuAACGCGC-GCACC---UCCG--------GCUCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 34671 | 0.72 | 0.153733 |
Target: 5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3' miRNA: 3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 8137 | 0.7 | 0.206332 |
Target: 5'- uGGUUGUGgGCGUGcGGGuGUCG-GCGCUg -3' miRNA: 3'- -CUAACGCgCGCAC-CUC-CGGCuCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 16061 | 0.7 | 0.223166 |
Target: 5'- ---cGCGCaCGUGGccGCCGcgcgcGGCGCCg -3' miRNA: 3'- cuaaCGCGcGCACCucCGGC-----UCGCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 11172 | 0.69 | 0.25316 |
Target: 5'- cGUUGCGUGCGcUGGucGGCCGuggugauGGUGCg -3' miRNA: 3'- cUAACGCGCGC-ACCu-CCGGC-------UCGCGg -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 6274 | 0.69 | 0.253805 |
Target: 5'- --cUGCGCGC-UGGgcAGGCCGAacagGuCGCCc -3' miRNA: 3'- cuaACGCGCGcACC--UCCGGCU----C-GCGG- -5' |
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26665 | 3' | -60.1 | NC_005808.1 | + | 37311 | 0.66 | 0.410753 |
Target: 5'- ---cGCGCuGCGUGGccGCCugcaccGCGCCc -3' miRNA: 3'- cuaaCGCG-CGCACCucCGGcu----CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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