miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 3' -60.1 NC_005808.1 + 16061 0.7 0.223166
Target:  5'- ---cGCGCaCGUGGccGCCGcgcgcGGCGCCg -3'
miRNA:   3'- cuaaCGCGcGCACCucCGGC-----UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 28285 0.7 0.206332
Target:  5'- ----cCGCGCGUGGucgucggcguGGCCGAccuggacaagGCGCCg -3'
miRNA:   3'- cuaacGCGCGCACCu---------CCGGCU----------CGCGG- -5'
26665 3' -60.1 NC_005808.1 + 8137 0.7 0.206332
Target:  5'- uGGUUGUGgGCGUGcGGGuGUCG-GCGCUg -3'
miRNA:   3'- -CUAACGCgCGCAC-CUC-CGGCuCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 7504 0.7 0.20097
Target:  5'- ---aGuCGCGCGUcGAGGaaguguCCGGGCGCCc -3'
miRNA:   3'- cuaaC-GCGCGCAcCUCC------GGCUCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 18744 0.71 0.195729
Target:  5'- ---gGCcCGCGUGGuguaacaggccgGGGgCGGGCGCCg -3'
miRNA:   3'- cuaaCGcGCGCACC------------UCCgGCUCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 34671 0.72 0.153733
Target:  5'- ---gGCGUGaagGUGGAcGCCGAGCGCa -3'
miRNA:   3'- cuaaCGCGCg--CACCUcCGGCUCGCGg -5'
26665 3' -60.1 NC_005808.1 + 4166 0.73 0.134093
Target:  5'- -cUUGCGCGcCGUGGucgAGGUguagccagUGGGCGCCg -3'
miRNA:   3'- cuAACGCGC-GCACC---UCCG--------GCUCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 24116 0.73 0.132992
Target:  5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3'
miRNA:   3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 13295 0.74 0.120073
Target:  5'- cGAUUGCaGCGCGccGGGGCCG-GCGUUg -3'
miRNA:   3'- -CUAACG-CGCGCacCUCCGGCuCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 41218 0.74 0.110465
Target:  5'- cGUUGUGCGCGU---GGCCGcGGCGCCc -3'
miRNA:   3'- cUAACGCGCGCAccuCCGGC-UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 15876 0.74 0.104465
Target:  5'- --cUGCGCG-GUGGuGGCCGAGgGUa -3'
miRNA:   3'- cuaACGCGCgCACCuCCGGCUCgCGg -5'
26665 3' -60.1 NC_005808.1 + 7148 0.76 0.081076
Target:  5'- ---gGCGCGcCGUGGguAGGCCGcGGCGUCa -3'
miRNA:   3'- cuaaCGCGC-GCACC--UCCGGC-UCGCGG- -5'
26665 3' -60.1 NC_005808.1 + 13152 1.11 0.000151
Target:  5'- aGAUUGCGCGCGUGGAGGCCGAGCGCCa -3'
miRNA:   3'- -CUAACGCGCGCACCUCCGGCUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.