miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 15439 0.69 0.412122
Target:  5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3'
miRNA:   3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 15896 0.66 0.578861
Target:  5'- aCGGACGG-CGUGUUCGAGUccuGCGCGGu -3'
miRNA:   3'- -GUCUGCCgGCGUGAGUUCGu--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 16332 0.69 0.421701
Target:  5'- cCGGGUGGCCGCGCgCGAGgcCAACGCc- -3'
miRNA:   3'- -GUCUGCCGGCGUGaGUUC--GUUGCGcu -5'
26665 5' -56 NC_005808.1 + 16473 0.71 0.324136
Target:  5'- --cGCGGCCGUguccuACuUCGAGCAACGcCGAu -3'
miRNA:   3'- gucUGCCGGCG-----UG-AGUUCGUUGC-GCU- -5'
26665 5' -56 NC_005808.1 + 16748 0.69 0.409275
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 16806 0.75 0.1672
Target:  5'- cCAGuuGGUCGCGCcCAGGCGGCGCa- -3'
miRNA:   3'- -GUCugCCGGCGUGaGUUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 18569 0.67 0.534949
Target:  5'- uGGA-GGCCGCGCUCGcGGUGACGg-- -3'
miRNA:   3'- gUCUgCCGGCGUGAGU-UCGUUGCgcu -5'
26665 5' -56 NC_005808.1 + 19975 0.66 0.59443
Target:  5'- uCGGGCaGGCCGCcgauguccgcguagaACUCGccaacuugcucGGCAugGCGc -3'
miRNA:   3'- -GUCUG-CCGGCG---------------UGAGU-----------UCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 20758 0.69 0.412123
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 20842 0.67 0.513426
Target:  5'- uGGACGugcaGCCGCGCgaugagUCGAGCGcgGCGCa- -3'
miRNA:   3'- gUCUGC----CGGCGUG------AGUUCGU--UGCGcu -5'
26665 5' -56 NC_005808.1 + 21196 0.66 0.55678
Target:  5'- -cGGCGGCCaaGCU-GGGCAGCGuCGAu -3'
miRNA:   3'- guCUGCCGGcgUGAgUUCGUUGC-GCU- -5'
26665 5' -56 NC_005808.1 + 21251 0.71 0.324136
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5'
26665 5' -56 NC_005808.1 + 22253 0.68 0.471517
Target:  5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3'
miRNA:   3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5'
26665 5' -56 NC_005808.1 + 23364 0.69 0.421701
Target:  5'- cCAGugcCGGCCGCAaaCAGGCAuuCGUGGc -3'
miRNA:   3'- -GUCu--GCCGGCGUgaGUUCGUu-GCGCU- -5'
26665 5' -56 NC_005808.1 + 24011 0.69 0.431413
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 24168 0.71 0.332274
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5'
26665 5' -56 NC_005808.1 + 24285 0.69 0.401743
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 25145 0.7 0.357582
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 25360 0.73 0.219129
Target:  5'- aGGGcCGGCCGCACgaccucaaggcauUCGacgaagugaccgAGCAGCGCGAg -3'
miRNA:   3'- gUCU-GCCGGCGUG-------------AGU------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25620 0.69 0.40268
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.