miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 35876 0.74 0.208194
Target:  5'- -cGAC-GCCGUGCUCAAGCAgauGCGCGc -3'
miRNA:   3'- guCUGcCGGCGUGAGUUCGU---UGCGCu -5'
26665 5' -56 NC_005808.1 + 3492 0.72 0.264387
Target:  5'- -cGACGGcCCGCugUacCAGuacGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 39867 0.72 0.285682
Target:  5'- gCAGcGCcgGGCCGCGCUCAAGCGuccggccaACGUGu -3'
miRNA:   3'- -GUC-UG--CCGGCGUGAGUUCGU--------UGCGCu -5'
26665 5' -56 NC_005808.1 + 38194 0.71 0.300616
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25783 0.71 0.308307
Target:  5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 37546 0.71 0.316147
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5'
26665 5' -56 NC_005808.1 + 6591 0.71 0.332274
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 24168 0.71 0.332274
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5'
26665 5' -56 NC_005808.1 + 35255 0.7 0.357582
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 2937 0.7 0.384211
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25620 0.69 0.40268
Target:  5'- -cGGCGG-CGCGgUCGccAGCAGCGCGu -3'
miRNA:   3'- guCUGCCgGCGUgAGU--UCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 16748 0.69 0.409275
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 20758 0.69 0.412123
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 5233 0.68 0.441254
Target:  5'- gCAGGCGGUgGCA----GGCAAUGCGGc -3'
miRNA:   3'- -GUCUGCCGgCGUgaguUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 32434 0.68 0.441254
Target:  5'- uGGGCGGCCGgGgcCUCGgcGGCGACcgcaGCGAc -3'
miRNA:   3'- gUCUGCCGGCgU--GAGU--UCGUUG----CGCU- -5'
26665 5' -56 NC_005808.1 + 4102 0.68 0.451221
Target:  5'- ---cCGGCUGCGCUCGAcCcGCGCGGc -3'
miRNA:   3'- gucuGCCGGCGUGAGUUcGuUGCGCU- -5'
26665 5' -56 NC_005808.1 + 41850 0.68 0.46131
Target:  5'- gCAGGUGGCUGgGCUUGAGC-GCGCGc -3'
miRNA:   3'- -GUCUGCCGGCgUGAGUUCGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 28874 0.68 0.468443
Target:  5'- -cGACGGCgCGCuggcuGCUCAagaucggcaaccagGGCaAGCGCGAc -3'
miRNA:   3'- guCUGCCG-GCG-----UGAGU--------------UCG-UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 27485 0.68 0.471517
Target:  5'- cCGGGCGcGgUGCGC-CAGGCG-CGCGAc -3'
miRNA:   3'- -GUCUGC-CgGCGUGaGUUCGUuGCGCU- -5'
26665 5' -56 NC_005808.1 + 22253 0.68 0.471517
Target:  5'- cCAGAucaCGGUCGCGCagAuGguGCGCGAa -3'
miRNA:   3'- -GUCU---GCCGGCGUGagUuCguUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.