miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26665 5' -56 NC_005808.1 + 15439 0.69 0.412122
Target:  5'- gCAcGCGGaCGCGCUCAccgaggugaAGCAGCGCa- -3'
miRNA:   3'- -GUcUGCCgGCGUGAGU---------UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 34833 0.69 0.40268
Target:  5'- aGGcGCGGCUGCACgaugacCAGGCGcACGCGc -3'
miRNA:   3'- gUC-UGCCGGCGUGa-----GUUCGU-UGCGCu -5'
26665 5' -56 NC_005808.1 + 24285 0.69 0.401743
Target:  5'- aAGAuCGGCCGCucgccggACUUuGGCAGCGCc- -3'
miRNA:   3'- gUCU-GCCGGCG-------UGAGuUCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 16748 0.69 0.409275
Target:  5'- -uGGCGGUCaCGCUCGugggcguagccaccGGCGACGUGAa -3'
miRNA:   3'- guCUGCCGGcGUGAGU--------------UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 20758 0.69 0.412123
Target:  5'- gAGGCGcugcGCCGCGCUCGAcuCAucGCGCGGc -3'
miRNA:   3'- gUCUGC----CGGCGUGAGUUc-GU--UGCGCU- -5'
26665 5' -56 NC_005808.1 + 24011 0.69 0.431413
Target:  5'- aGGugGGCgCGUcggccaAUUCAgcgaaGGCGACGCGAc -3'
miRNA:   3'- gUCugCCG-GCG------UGAGU-----UCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 35048 0.69 0.431413
Target:  5'- cCGGugGcGCCGCAgaUCGAGCAcgccgccgaGCGCa- -3'
miRNA:   3'- -GUCugC-CGGCGUg-AGUUCGU---------UGCGcu -5'
26665 5' -56 NC_005808.1 + 37512 0.7 0.348998
Target:  5'- gCAGGCGGCCGUcgcuGCUCAcGCccuugGCGAg -3'
miRNA:   3'- -GUCUGCCGGCG----UGAGUuCGuug--CGCU- -5'
26665 5' -56 NC_005808.1 + 2937 0.7 0.384211
Target:  5'- -cGACGGcCCGUugUucCAGuucGCAGCGCGAg -3'
miRNA:   3'- guCUGCC-GGCGugA--GUU---CGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 35255 0.7 0.357582
Target:  5'- gAGGucgaGGCCGCGCUCAAgGCcAUGCGu -3'
miRNA:   3'- gUCUg---CCGGCGUGAGUU-CGuUGCGCu -5'
26665 5' -56 NC_005808.1 + 25145 0.7 0.357582
Target:  5'- cCGGGCGcGCUGCGCUgGguGGCGAUGCu- -3'
miRNA:   3'- -GUCUGC-CGGCGUGAgU--UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 38194 0.71 0.300616
Target:  5'- -cGACuGCCGCacGCUCAAGgccCGGCGCGAc -3'
miRNA:   3'- guCUGcCGGCG--UGAGUUC---GUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 25783 0.71 0.308307
Target:  5'- -cGAUGGCCGCGaugCGcGCGGCGCGc -3'
miRNA:   3'- guCUGCCGGCGUga-GUuCGUUGCGCu -5'
26665 5' -56 NC_005808.1 + 37546 0.71 0.316147
Target:  5'- --cGCGGCCuGUGCUCAAGCAggACGCc- -3'
miRNA:   3'- gucUGCCGG-CGUGAGUUCGU--UGCGcu -5'
26665 5' -56 NC_005808.1 + 6591 0.71 0.332274
Target:  5'- cCAGcACGGCCgGCACcacguaGAGCAugGCGu -3'
miRNA:   3'- -GUC-UGCCGG-CGUGag----UUCGUugCGCu -5'
26665 5' -56 NC_005808.1 + 24168 0.71 0.332274
Target:  5'- -cGACGGCugCGCGCUUcGGCGuguccaugaGCGCGAg -3'
miRNA:   3'- guCUGCCG--GCGUGAGuUCGU---------UGCGCU- -5'
26665 5' -56 NC_005808.1 + 28607 0.71 0.293075
Target:  5'- -cGGCGGCCGCAaggucgugccgUUCAacaAGCAGCGCc- -3'
miRNA:   3'- guCUGCCGGCGU-----------GAGU---UCGUUGCGcu -5'
26665 5' -56 NC_005808.1 + 12078 0.71 0.308307
Target:  5'- cCGGccACGGCCGCGCUgCuGGCcGACGUGGa -3'
miRNA:   3'- -GUC--UGCCGGCGUGA-GuUCG-UUGCGCU- -5'
26665 5' -56 NC_005808.1 + 32171 0.71 0.316146
Target:  5'- gCAG-CGGCCaGgGCgUUGAGCAACGCGGc -3'
miRNA:   3'- -GUCuGCCGG-CgUG-AGUUCGUUGCGCU- -5'
26665 5' -56 NC_005808.1 + 21251 0.71 0.324136
Target:  5'- gCAGACcagcagcaGGCCGCGCagCAGGCcGCGCu- -3'
miRNA:   3'- -GUCUG--------CCGGCGUGa-GUUCGuUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.