Results 21 - 40 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 24422 | 0.66 | 0.198918 |
Target: 5'- -aGCCGGCCcgauuugucGGUGCCgC-GCGCGGc -3' miRNA: 3'- ugCGGCCGGuuc------CCGCGG-GuCGCGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 23172 | 0.66 | 0.193915 |
Target: 5'- cCGCUGucGCCGuGGGCGCCgCcguuGGCGuCGGg -3' miRNA: 3'- uGCGGC--CGGUuCCCGCGG-G----UCGC-GCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 1303 | 0.67 | 0.189023 |
Target: 5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3' miRNA: 3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 4855 | 0.67 | 0.189023 |
Target: 5'- aGCGCCaGCCGGcgugcuGGGCGC--AGUGUGGg -3' miRNA: 3'- -UGCGGcCGGUU------CCCGCGggUCGCGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 39944 | 0.67 | 0.189023 |
Target: 5'- cACGuuGGCCGgacgcuugAGcGCgGCCCGGCGCu- -3' miRNA: 3'- -UGCggCCGGU--------UCcCG-CGGGUCGCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 34966 | 0.67 | 0.189023 |
Target: 5'- cUGCaaGGCCAAGGccacGUGUCCGGCGCu- -3' miRNA: 3'- uGCGg-CCGGUUCC----CGCGGGUCGCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 38102 | 0.67 | 0.189023 |
Target: 5'- -gGCCGaagucGCCGAGGcGCuGCUCGGUGCGc -3' miRNA: 3'- ugCGGC-----CGGUUCC-CG-CGGGUCGCGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 11655 | 0.67 | 0.189023 |
Target: 5'- cCGgCGGCCAGccGGCgGCCCuGgGCGGc -3' miRNA: 3'- uGCgGCCGGUUc-CCG-CGGGuCgCGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 38666 | 0.67 | 0.188539 |
Target: 5'- uCGCUGGCUuucaaacucgcauGGGGGCGCggCCAuGCGUGa -3' miRNA: 3'- uGCGGCCGG-------------UUCCCGCG--GGU-CGCGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 26325 | 0.67 | 0.188539 |
Target: 5'- cCGaCCaGGCCGGcGGGUGCCCGugccuucggcgacGCGCGc -3' miRNA: 3'- uGC-GG-CCGGUU-CCCGCGGGU-------------CGCGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 11346 | 0.67 | 0.184239 |
Target: 5'- cCGCCuaccuGGCCGAGcgucccaGCGCCgCAGCGCa- -3' miRNA: 3'- uGCGG-----CCGGUUCc------CGCGG-GUCGCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 465 | 0.67 | 0.184239 |
Target: 5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3' miRNA: 3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 8806 | 0.67 | 0.184239 |
Target: 5'- cGCGCCGGUCAGuaccgaucugcuGGGUcgGgCCAGCcgcaacGCGGg -3' miRNA: 3'- -UGCGGCCGGUU------------CCCG--CgGGUCG------CGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 38212 | 0.67 | 0.184239 |
Target: 5'- gGC-CCGGCgCGAcGGCGCCUGGCuGCGc -3' miRNA: 3'- -UGcGGCCG-GUUcCCGCGGGUCG-CGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 7302 | 0.67 | 0.184239 |
Target: 5'- -gGCCGacaucGCCGAGGGUgaGCgCGGCGCa- -3' miRNA: 3'- ugCGGC-----CGGUUCCCG--CGgGUCGCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 36831 | 0.67 | 0.183767 |
Target: 5'- cACGauGGUCAAGGcccuggcgcacucGCuGCCCGGCGCGc -3' miRNA: 3'- -UGCggCCGGUUCC-------------CG-CGGGUCGCGCc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 15519 | 0.67 | 0.182825 |
Target: 5'- aGCuUCGGCCAAGGGCGCgUcaagaacaucaacaAGCuGUGGu -3' miRNA: 3'- -UGcGGCCGGUUCCCGCGgG--------------UCG-CGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 30203 | 0.67 | 0.179563 |
Target: 5'- gACGCggugcaGGCCGGcGGCGUguuCUGGCGCGGc -3' miRNA: 3'- -UGCGg-----CCGGUUcCCGCG---GGUCGCGCC- -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 4745 | 0.67 | 0.179563 |
Target: 5'- uCGCCGGCUAuccGGCGCgCUGGUGCc- -3' miRNA: 3'- uGCGGCCGGUuc-CCGCG-GGUCGCGcc -5' |
|||||||
26666 | 3' | -65.6 | NC_005808.1 | + | 6700 | 0.67 | 0.179563 |
Target: 5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3' miRNA: 3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home