Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26666 | 5' | -55.8 | NC_005808.1 | + | 32532 | 0.69 | 0.446752 |
Target: 5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3' miRNA: 3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5' |
|||||||
26666 | 5' | -55.8 | NC_005808.1 | + | 25617 | 0.68 | 0.477147 |
Target: 5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3' miRNA: 3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' |
|||||||
26666 | 5' | -55.8 | NC_005808.1 | + | 8240 | 0.68 | 0.477147 |
Target: 5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3' miRNA: 3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5' |
|||||||
26666 | 5' | -55.8 | NC_005808.1 | + | 19996 | 0.68 | 0.50853 |
Target: 5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3' miRNA: 3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5' |
|||||||
26666 | 5' | -55.8 | NC_005808.1 | + | 13215 | 1.11 | 0.000454 |
Target: 5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3' miRNA: 3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home