Results 41 - 60 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26667 | 3' | -59.7 | NC_005808.1 | + | 23417 | 0.77 | 0.067449 |
Target: 5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 7223 | 0.77 | 0.067449 |
Target: 5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3' miRNA: 3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 27824 | 0.78 | 0.063696 |
Target: 5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3' miRNA: 3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 34844 | 0.79 | 0.052088 |
Target: 5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3' miRNA: 3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 11146 | 0.82 | 0.032758 |
Target: 5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3' miRNA: 3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 37755 | 0.75 | 0.110328 |
Target: 5'- aAGCUg--GCCGCUUuccgugaauucgacgACGGCGCCGGCCc -3' miRNA: 3'- -UCGGaugCGGCGGA---------------UGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 8386 | 0.74 | 0.11536 |
Target: 5'- cGGCCUcGCGCUGgCUGCGuagccaGUCGGCCa -3' miRNA: 3'- -UCGGA-UGCGGCgGAUGUug----CGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 38227 | 0.72 | 0.173968 |
Target: 5'- cGCCUggcuGCGCaucCGCCUGC--CGuCCGGCCg -3' miRNA: 3'- uCGGA----UGCG---GCGGAUGuuGC-GGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 28524 | 0.72 | 0.173968 |
Target: 5'- uGCCgGCGCUGCUUguugaacggcACGAccuugcggcCGCCGGCCa -3' miRNA: 3'- uCGGaUGCGGCGGA----------UGUU---------GCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 40711 | 0.72 | 0.169349 |
Target: 5'- uGCUguuCGCCcacCCggcCAGCGCCGGCCa -3' miRNA: 3'- uCGGau-GCGGc--GGau-GUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 2141 | 0.72 | 0.164839 |
Target: 5'- cAGCCggucaaccGCGCCGCCgUAC-ACGuuGGCg -3' miRNA: 3'- -UCGGa-------UGCGGCGG-AUGuUGCggCCGg -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 37464 | 0.73 | 0.147864 |
Target: 5'- cGCCUGCGCgGCacguUGCAguucaacgGCGCCaGCCg -3' miRNA: 3'- uCGGAUGCGgCGg---AUGU--------UGCGGcCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 11997 | 0.73 | 0.147864 |
Target: 5'- uGGCCUuuuccACGUCgGCCaGCAGCGC-GGCCg -3' miRNA: 3'- -UCGGA-----UGCGG-CGGaUGUUGCGgCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 19924 | 0.73 | 0.143877 |
Target: 5'- cAGCUUGuCGCCGCCgaACuccuUGUCGGCCg -3' miRNA: 3'- -UCGGAU-GCGGCGGa-UGuu--GCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 36124 | 0.74 | 0.128891 |
Target: 5'- gGGCCUGCGCgGCgUGCAguuccuGCGCgaCGGCg -3' miRNA: 3'- -UCGGAUGCGgCGgAUGU------UGCG--GCCGg -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 21179 | 0.74 | 0.125377 |
Target: 5'- cGGCCUgcuGCGCgGCCUGC--UGCUGGUCu -3' miRNA: 3'- -UCGGA---UGCGgCGGAUGuuGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 14900 | 0.74 | 0.125377 |
Target: 5'- gGGUCUGCGCgGCgauCUGCuGCugGCCGGCCu -3' miRNA: 3'- -UCGGAUGCGgCG---GAUGuUG--CGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 730 | 0.74 | 0.121952 |
Target: 5'- gGGCg-GCuuUGCCgACAACGCCGGCCa -3' miRNA: 3'- -UCGgaUGcgGCGGaUGUUGCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 34884 | 0.74 | 0.118613 |
Target: 5'- gAGCgUGCGCUGCaguucaucgGCAA-GCCGGCCg -3' miRNA: 3'- -UCGgAUGCGGCGga-------UGUUgCGGCCGG- -5' |
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26667 | 3' | -59.7 | NC_005808.1 | + | 20190 | 0.74 | 0.11536 |
Target: 5'- cGCCUuguCGUCGCCcucggucuugGCAGCGCCcgcGGCCg -3' miRNA: 3'- uCGGAu--GCGGCGGa---------UGUUGCGG---CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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