Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26669 | 3' | -53.6 | NC_005808.1 | + | 666 | 0.69 | 0.514143 |
Target: 5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3' miRNA: 3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 810 | 0.68 | 0.592597 |
Target: 5'- gACUGGAAaGACCuggCCGGCGUUGUCGGc -3' miRNA: 3'- -UGACCUUgUUGG---GGCUGCGGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 2127 | 0.72 | 0.346101 |
Target: 5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3' miRNA: 3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 4359 | 0.69 | 0.503254 |
Target: 5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3' miRNA: 3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 5365 | 0.66 | 0.72897 |
Target: 5'- cCUGGAAaauauCGACgCCGugGCCGaCAAc -3' miRNA: 3'- uGACCUU-----GUUGgGGCugCGGUaGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 8127 | 0.66 | 0.706707 |
Target: 5'- --aGGcAGCGACCUgGGCGCgCGUCAu- -3' miRNA: 3'- ugaCC-UUGUUGGGgCUGCG-GUAGUua -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 9008 | 0.7 | 0.481787 |
Target: 5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3' miRNA: 3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 9169 | 0.66 | 0.706707 |
Target: 5'- gGCcGGcAGCGACaaCuuGGCGCCGUCGAc -3' miRNA: 3'- -UGaCC-UUGUUG--GggCUGCGGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 9299 | 0.7 | 0.47122 |
Target: 5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3' miRNA: 3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 11826 | 0.66 | 0.72897 |
Target: 5'- gACUGGAACAGaCCggCCG-CGCCG-CGGUu -3' miRNA: 3'- -UGACCUUGUU-GG--GGCuGCGGUaGUUA- -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 11857 | 0.66 | 0.72897 |
Target: 5'- cCUGGGcgAACCCCG-CGCCAauaUCGc- -3' miRNA: 3'- uGACCUugUUGGGGCuGCGGU---AGUua -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 12227 | 0.67 | 0.626942 |
Target: 5'- --cGGAcACuGACCCCGACGCCuacgCGGa -3' miRNA: 3'- ugaCCU-UG-UUGGGGCUGCGGua--GUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 13811 | 0.69 | 0.525128 |
Target: 5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3' miRNA: 3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 13965 | 1.05 | 0.001809 |
Target: 5'- aACUGGAACAACCCCGACGCCAUCAAUu -3' miRNA: 3'- -UGACCUUGUUGGGGCUGCGGUAGUUA- -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 15530 | 0.67 | 0.66133 |
Target: 5'- aACUGGAcgGCAGCUUCGGCcaaggGCgCGUCAAg -3' miRNA: 3'- -UGACCU--UGUUGGGGCUG-----CG-GUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 18455 | 0.66 | 0.717885 |
Target: 5'- -gUGGcc--GCCaCCGGCGCCAUCGGc -3' miRNA: 3'- ugACCuuguUGG-GGCUGCGGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 19040 | 0.75 | 0.253368 |
Target: 5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3' miRNA: 3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 21316 | 0.68 | 0.569864 |
Target: 5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3' miRNA: 3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 22503 | 0.73 | 0.304739 |
Target: 5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3' miRNA: 3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5' |
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26669 | 3' | -53.6 | NC_005808.1 | + | 22794 | 0.68 | 0.569864 |
Target: 5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3' miRNA: 3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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