Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26669 | 5' | -47.9 | NC_005808.1 | + | 1425 | 0.69 | 0.901645 |
Target: 5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3' miRNA: 3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 15456 | 0.69 | 0.878473 |
Target: 5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3' miRNA: 3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 10794 | 0.7 | 0.858943 |
Target: 5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3' miRNA: 3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 32998 | 0.7 | 0.824593 |
Target: 5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3' miRNA: 3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 28622 | 0.71 | 0.814745 |
Target: 5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3' miRNA: 3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 8511 | 0.71 | 0.804679 |
Target: 5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3' miRNA: 3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 1113 | 0.72 | 0.773303 |
Target: 5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3' miRNA: 3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 23238 | 0.73 | 0.706455 |
Target: 5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3' miRNA: 3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 7136 | 0.73 | 0.706455 |
Target: 5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3' miRNA: 3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 23298 | 0.73 | 0.683365 |
Target: 5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3' miRNA: 3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 8715 | 0.76 | 0.509752 |
Target: 5'- cCGAccgCGCgAUGAAGGCCGGcGACCUcgCCa -3' miRNA: 3'- -GCUa--GCG-UAUUUCCGGCU-UUGGAa-GG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 13148 | 0.77 | 0.498662 |
Target: 5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3' miRNA: 3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 35154 | 0.77 | 0.46607 |
Target: 5'- --uUCGCGcGAAGGCCGAAGCCgaacugcuggCCg -3' miRNA: 3'- gcuAGCGUaUUUCCGGCUUUGGaa--------GG- -5' |
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26669 | 5' | -47.9 | NC_005808.1 | + | 13931 | 1.15 | 0.002082 |
Target: 5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3' miRNA: 3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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