miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2667 3' -48.2 NC_001491.2 + 83392 0.66 0.999704
Target:  5'- uGAGCAAcuauuugccgucagCGUCGCUgucuuccCGGCGCCuuggGCCg -3'
miRNA:   3'- -CUUGUUa-------------GCAGUGAau-----GCUGCGG----UGG- -5'
2667 3' -48.2 NC_001491.2 + 149706 0.66 0.999667
Target:  5'- aGGACAAUCGcauaaccgcugcaUCACcggaguggGCGugGCCucCCa -3'
miRNA:   3'- -CUUGUUAGC-------------AGUGaa------UGCugCGGu-GG- -5'
2667 3' -48.2 NC_001491.2 + 81495 0.66 0.99959
Target:  5'- -uGCAG-CGgagaGCgc-CGACGCCGCCa -3'
miRNA:   3'- cuUGUUaGCag--UGaauGCUGCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 109392 0.66 0.999487
Target:  5'- -uACGGcuUCGUUguAUUUugGGCGuCCGCCg -3'
miRNA:   3'- cuUGUU--AGCAG--UGAAugCUGC-GGUGG- -5'
2667 3' -48.2 NC_001491.2 + 80157 0.66 0.999487
Target:  5'- uAACuAUUGUUACUUGCcgccugaccGGCGCC-CCg -3'
miRNA:   3'- cUUGuUAGCAGUGAAUG---------CUGCGGuGG- -5'
2667 3' -48.2 NC_001491.2 + 34178 0.67 0.999212
Target:  5'- aGAGCGG-CGgaggCGCcggggcUACGAcCGCCACCu -3'
miRNA:   3'- -CUUGUUaGCa---GUGa-----AUGCU-GCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 3043 0.67 0.999032
Target:  5'- uGGCGGUCGUaGCcc-CGGCGCCuCCg -3'
miRNA:   3'- cUUGUUAGCAgUGaauGCUGCGGuGG- -5'
2667 3' -48.2 NC_001491.2 + 25667 0.67 0.998819
Target:  5'- -uGCA--CGUCACUgaaGACGCCuuCCa -3'
miRNA:   3'- cuUGUuaGCAGUGAaugCUGCGGu-GG- -5'
2667 3' -48.2 NC_001491.2 + 65541 0.67 0.998795
Target:  5'- uGGCGGUCGcuaaGCUUAaccggauCGACGCCAgCCu -3'
miRNA:   3'- cUUGUUAGCag--UGAAU-------GCUGCGGU-GG- -5'
2667 3' -48.2 NC_001491.2 + 133465 0.67 0.99827
Target:  5'- aAGCGccAUCGcCugUUuuaGCGcGCGCCGCCa -3'
miRNA:   3'- cUUGU--UAGCaGugAA---UGC-UGCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 3964 0.68 0.997923
Target:  5'- -uGCGAUCGUaGCg-GCGGCucaugGCCACCa -3'
miRNA:   3'- cuUGUUAGCAgUGaaUGCUG-----CGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 60337 0.68 0.997053
Target:  5'- -----uUCGUCGCUUAgGGggggaaUGCCACCc -3'
miRNA:   3'- cuuguuAGCAGUGAAUgCU------GCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 18769 0.68 0.996515
Target:  5'- aGGCAuaaaAUUGUCACUguuaGCGugGUCGCa -3'
miRNA:   3'- cUUGU----UAGCAGUGAa---UGCugCGGUGg -5'
2667 3' -48.2 NC_001491.2 + 23562 0.69 0.995199
Target:  5'- aGACAAUCGUCgucauccucaucGCUUucagaGGCGCUAUCg -3'
miRNA:   3'- cUUGUUAGCAG------------UGAAug---CUGCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 110679 0.69 0.995123
Target:  5'- -cGCGAguaaauuUCGUCGCggGCGGCGCUAa- -3'
miRNA:   3'- cuUGUU-------AGCAGUGaaUGCUGCGGUgg -5'
2667 3' -48.2 NC_001491.2 + 52637 0.69 0.994403
Target:  5'- -uACGAUCGcCGCccGCGGagagacgugguCGCCACCg -3'
miRNA:   3'- cuUGUUAGCaGUGaaUGCU-----------GCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 68 0.69 0.993503
Target:  5'- ------aCGUCACUUccugUGACGUCACCg -3'
miRNA:   3'- cuuguuaGCAGUGAAu---GCUGCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 12546 0.69 0.993503
Target:  5'- cGAGCGGgcgCGggaGCgcGCGAgCGCCGCCu -3'
miRNA:   3'- -CUUGUUa--GCag-UGaaUGCU-GCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 24712 0.69 0.992492
Target:  5'- -cACGGcCGcCGCc-GCGACGCCGCCc -3'
miRNA:   3'- cuUGUUaGCaGUGaaUGCUGCGGUGG- -5'
2667 3' -48.2 NC_001491.2 + 136882 0.7 0.985422
Target:  5'- cGGACGcggcAUCGcUCGCgugUGCGGCaGCCACg -3'
miRNA:   3'- -CUUGU----UAGC-AGUGa--AUGCUG-CGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.