Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2667 | 3' | -48.2 | NC_001491.2 | + | 25667 | 0.67 | 0.998819 |
Target: 5'- -uGCA--CGUCACUgaaGACGCCuuCCa -3' miRNA: 3'- cuUGUuaGCAGUGAaugCUGCGGu-GG- -5' |
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2667 | 3' | -48.2 | NC_001491.2 | + | 65541 | 0.67 | 0.998795 |
Target: 5'- uGGCGGUCGcuaaGCUUAaccggauCGACGCCAgCCu -3' miRNA: 3'- cUUGUUAGCag--UGAAU-------GCUGCGGU-GG- -5' |
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2667 | 3' | -48.2 | NC_001491.2 | + | 133465 | 0.67 | 0.99827 |
Target: 5'- aAGCGccAUCGcCugUUuuaGCGcGCGCCGCCa -3' miRNA: 3'- cUUGU--UAGCaGugAA---UGC-UGCGGUGG- -5' |
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2667 | 3' | -48.2 | NC_001491.2 | + | 3964 | 0.68 | 0.997923 |
Target: 5'- -uGCGAUCGUaGCg-GCGGCucaugGCCACCa -3' miRNA: 3'- cuUGUUAGCAgUGaaUGCUG-----CGGUGG- -5' |
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2667 | 3' | -48.2 | NC_001491.2 | + | 83505 | 1.12 | 0.011645 |
Target: 5'- gGAACAAUCGUCACUUACGACGCCACCc -3' miRNA: 3'- -CUUGUUAGCAGUGAAUGCUGCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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